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[182261_at]

Description C23H3.2 /REP_DB=WormBase Gene ID /WP=CE27078 /TR=P91081 /GB=AAK31447.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 44      6grp_total > 71      4grp_total > 57      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1245
1 2 3 4 range
A 714.2
(-0.4)
P 		1029.5
(1.2)
P 		1413.1
(3)
P 		168.4
(-3)
P 		1245
B 586.7
(-1.1)
P 		1259.1
(2.9)
P 		1281.4
(3)
P 		270.3
(-3)
P 		1011
C 656.2
(-1.2)
P 		1254.9
(2.2)
P 		1397
(3)
P 		350
(-3)
P 		1047
avr 652.4
(-0.9) 		1181.2
(2) 		1363.8
(3) 		262.9
(-3) 		1101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1507
1 2 3 4 5 6 range
A 966.1
(-2.3)
P 		1495.6
(0.4)
P 		1987.1
(2.9)
P 		2015.1
(3)
P 		1492.9
(0.3)
P 		837
(-3)
P 		1178
B 1247.3
(-1.3)
P 		1469
(-0.4)
P 		1610.8
(0.2)
P 		2314.9
(3)
P 		1483.1
(-0.3)
P 		808.1
(-3)
P 		1507
C 1102.2
(-2)
P 		1525
(-0.1)
P 		1949.8
(1.9)
P 		2189.7
(3)
P 		1471
(-0.3)
P 		889.9
(-3)
P 		1300
avr 1105.2
(-1.8) 		1496.5
(-0.1) 		1849.2
(1.5) 		2173.2
(3) 		1482.3
(-0.1) 		845
(-3) 		1328
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 462
1 2 3 4 range
A 260
(1.1)
P 		223.5
(0.5)
P 		369.4
(3)
P 		24.7
(-3)
P 		345
B 187.1
(0.1)
P 		311
(3)
P 		296.9
(2.7)
P 		57.6
(-3)
P 		253
C 217.2
(-0.8)
P 		360.8
(1.2)
P 		486.9
(3)
P 		59
(-3)
P 		428
avr 221.4
(0.1) 		298.4
(1.5) 		384.4
(3) 		47.1
(-3) 		337

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 435
1 2 3 4 5 6 range
A 178.1
(-3)
P 		531.9
(3)
P 		432.7
(1.3)
P 		511.1
(2.6)
P 		450.5
(1.6)
P 		203.8
(-2.6)
P 		354
B 434
(-0.4)
P 		489
(0.6)
P 		391.2
(-1.3)
P 		613.1
(3)
P 		602.5
(2.8)
P 		301.4
(-3)
P 		312
C 408.6
(0.3)
P 		465.3
(2.1)
P 		496.3
(3)
P 		440.3
(1.3)
P 		476
(2.4)
P 		297.9
(-3)
P 		198
avr 340.2
(-1.3) 		495.4
(2.4) 		440.1
(1.1) 		521.5
(3) 		509.7
(2.7) 		267.7
(-3) 		254
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182261_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5288
Sequence Type Exemplar sequence
Representative Public ID C23H3.2 NCBI
Target Description C23H3.2 /REP_DB=WormBase Gene ID /WP=CE27078 /TR=P91081 /GB=AAK31447.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061250(11), NM_182217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061250 NCBI Caenorhabditis elegans C23H3.2a (C23H3.2) mRNA, complete cds. 11/11 None
NM_182217 NCBI Caenorhabditis elegans C23H3.2b (C23H3.2) mRNA, complete cds. 11/11 None
SNAP00000015919 ENSEMBL cdna:SNAP chromosome:CEL140:II:63081:64142:1 11/11 None
GENEFINDER00000015931 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:62972:64142:1 11/11 None
C23H3.2a ENSEMBL cdna:known chromosome:CEL140:II:61313:64297:1 gene:C23H3.2 11/11 None
C23H3.2b ENSEMBL cdna:known chromosome:CEL140:II:63081:64142:1 gene:C23H3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:63080-64142(+) 100.0 100.0
Public Domain and Genome References
Ensembl C23H3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31447 Hypothetical protein C23H3.2a [Caenorhabditis elegans] ref|NP_493651.1| C23H3.2a [Caenorhabditis elegans] 0.0
blast CAE62818 Hypothetical protein CBG06997 [Caenorhabditis briggsae] 1.0E-176
blast AAK31447 Hypothetical protein C23H3.2a [Caenorhabditis elegans] ref|NP_493651.1| C23H3.2a [Caenorhabditis elegans] 1.0E-159
blast AAN63451 Hypothetical protein C23H3.2b [Caenorhabditis elegans] ref|NP_872017.1| C23H3.2b [Caenorhabditis elegans] 1.0E-157
blast AAK31447 Hypothetical protein C23H3.2a [Caenorhabditis elegans] ref|NP_493651.1| C23H3.2a [Caenorhabditis elegans] 1.0E-157
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493651.1 4 75-97,164-186,198-220,286-308
NP_872017.1 4 12-34,101-123,135-157,223-245
C23H3.2a 4 75-97,164-186,198-220,286-308
C23H3.2b 4 12-34,101-123,135-157,223-245
SNAP00000015919 4 12-34,101-123,135-157,223-245
GENEFINDER00000015931 4 21-43,111-133,145-167,233-255
Sequence
Target Sequence 
>C. ELEGANS:182261_AT
ctcttcccaattgttctggctattcacatgggatggattgctggcaatggagcgaagttc
gcctacagaatagttcttctcattggcctcttgttttgtattgctcaatttttgtatctt
gtgcacccaattttctggggagccgtccgtttcccaggaatgcttgaccgattgttcctc
gaggcttatcctcgtgatcaataccaaattgacagtatccaaaaaagattcgcttgtgag
ttcaaaccacacgaaacattggttcagttagacctgcaacaaccttgcatcccaaaaatg
aagaattccttattgccgacttattctacacttttgctcattttcatcgacctgtttcca
tttttgtttggcgctttcatctacgcgtggagtgcctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTTCCCAATTGTTCTGGCTATTC 14 229 346 Antisense
AGAATAGTTCTTCTCATTGGCCTCT 596 71 412 Antisense
TTGGCCTCTTGTTTTGTATTGCTCA 402 709 428 Antisense
TGTATCTTGTGCACCCAATTTTCTG 50 561 458 Antisense
GAATGCTTGACCGATTGTTCCTCGA 520 331 503 Antisense
GAGGCTTATCCTCGTGATCAATACC 503 405 526 Antisense
AAGAATTCCTTATTGCCGACTTATT 378 151 646 Antisense
CCGACTTATTCTACACTTTTGCTCA 699 263 661 Antisense
TCATCGACCTGTTTCCATTTTTGTT 477 621 689 Antisense
ATTTTTGTTTGGCGCTTTCATCTAC 392 15 705 Antisense
TTCATCTACGCGTGGAGTGCCTGGA 304 679 721 Antisense
Sequence Source Affymetrix Proprietary Database