[Home] | [Total List]

[182260_at]

Description C01F1.2 /REP_DB=WormBase Gene ID /WP=CE06743 /TR=Q17557 /GB=AAB00716.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 0      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 74      6grp_total > 08      4grp_total > 60      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 628
1 2 3 4 range
A 671.3
(1.5)
P 		672.7
(1.5)
P 		790.1
(3)
P 		323
(-3)
P 		467
B 752.9
(2)
P 		773.9
(2.2)
P 		853.1
(3)
P 		225.2
(-3)
P 		628
C 729.2
(3)
P 		641.3
(1.7)
P 		705
(2.7)
P 		312.3
(-3)
P 		417
avr 717.8
(2.2) 		696
(2) 		782.7
(3) 		286.8
(-3) 		496

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 583.7
(-2.1)
P 		664.4
(1.7)
P 		604.2
(-1.2)
P 		692.5
(3)
P 		565.3
(-3)
P 		640.6
(0.6)
P 		127
B 680.9
(1.2)
P 		671.5
(0.9)
P 		561.4
(-2.7)
P 		735.8
(3)
P 		588.8
(-1.8)
P 		551.8
(-3)
P 		184
C 793.6
(3)
P 		568
(-2.5)
P 		652.1
(-0.5)
P 		565
(-2.6)
P 		548.5
(-3)
P 		693.9
(0.6)
P 		245
avr 686.1
(3) 		634.6
(0.4) 		605.9
(-1.1) 		664.4
(1.9) 		567.5
(-3) 		628.8
(0.1) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 244.4
(3)
P 		146
(0)
P 		206.5
(1.8)
P 		47.3
(-3)
P 		197
B 240.1
(3)
P 		191.1
(1.5)
P 		197.7
(1.7)
P 		48
(-3)
P 		192
C 241.4
(2.9)
P 		184.4
(1.1)
P 		245.7
(3)
P 		52.7
(-3)
P 		193
avr 242
(3) 		173.8
(0.9) 		216.6
(2.2) 		49.3
(-3) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 107.6
(-3)
P 		236.3
(3)
P 		131.6
(-1.9)
P 		175.6
(0.2)
P 		170.6
(-0.1)
P 		156
(-0.7)
P 		129
B 236.9
(2.9)
P 		223.5
(2.1)
P 		136.3
(-3)
P 		194.9
(0.4)
P 		239.2
(3)
P 		205.8
(1.1)
P 		103
C 294.1
(3)
P 		173.3
(-1)
P 		166
(-1.3)
P 		113.6
(-3)
P 		177.5
(-0.9)
P 		232.3
(0.9)
P 		181
avr 212.9
(3) 		211
(2.8) 		144.6
(-3) 		161.4
(-1.5) 		195.8
(1.5) 		198
(1.7) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182260_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4634
Sequence Type Exemplar sequence
Representative Public ID C01F1.2 NCBI
Target Description C01F1.2 /REP_DB=WormBase Gene ID /WP=CE06743 /TR=Q17557 /GB=AAB00716.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062354(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062354 NCBI Caenorhabditis elegans C01F1.2 (C01F1.2) mRNA, complete cds. 11/11 None
SNAP00000028116 ENSEMBL cdna:SNAP chromosome:CEL140:II:4299650:4300710:1 11/11 None
GENEFINDER00000028123 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4299650:4300710:1 11/11 None
C01F1.2 ENSEMBL cdna:known chromosome:CEL140:II:4299650:4300710:1 gene:C01F1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4299648-4300709(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01F1.2
Entrez Gene 173763 Entrez gene
SwissProt Q17557 EMBL-EBI
WormBase CE06743 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258987_AT electron transport SCO1/SenC family protein at
CANINE:1593330_AT similar to cytochrome oxidase deficient homolog 1 cfa
CANINE:1587785_S_AT similar to cytochrome oxidase deficient homolog 1 cfa
CANINE_2:CFA.362.1.A1_AT similar to cytochrome oxidase deficient homolog 1 cfa
DROSOPHILA_2:1636845_AT dm
DROSGENOME1:145798_AT dm
CHICKEN:GGAAFFX.8520.1.S1_AT similar to cytochrome oxidase deficient homolog 1; SCO (cytochrome oxidase deficient, yeast) homolog 1 gga
HU35KSUBA:RC_AA053021_AT SCO cytochrome oxidase deficient homolog 1 (yeast) hs
HG-U133B:223221_AT SCO cytochrome oxidase deficient homolog 1 (yeast) hs
HG-U133_PLUS_2:223221_AT SCO cytochrome oxidase deficient homolog 1 (yeast) hs
U133_X3P:G9963786_3P_AT SCO cytochrome oxidase deficient homolog 1 (yeast) hs
HG-U95C:65440_AT SCO cytochrome oxidase deficient homolog 1 (yeast) hs
MG-U74CV2:129199_AT SCO cytochrome oxidase deficient homolog 1 (yeast) mm
MG-U74CV2:166762_R_AT SCO cytochrome oxidase deficient homolog 1 (yeast) mm
MOE430B:1430300_AT SCO cytochrome oxidase deficient homolog 1 (yeast) mm
MOUSE430_2:1430300_AT SCO cytochrome oxidase deficient homolog 1 (yeast) mm
RAE230B:1378080_AT similar to SCO cytochrome oxidase deficient homolog 1 (yeast) rn
RAT230_2:1378080_AT similar to SCO cytochrome oxidase deficient homolog 1 (yeast) rn
RG-U34B:RC_AA999138_AT Similar to SCO cytochrome oxidase deficient homolog 1 (yeast) rn
YEAST_2:1773332_AT Copper-binding protein of the mitochondrial inner membrane, required for cytochrome c oxidase activity and respiration; may function to deliver copper to cytochrome c oxidase; has similarity to thioredoxins Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00716 Hypothetical protein C01F1.2 [Caenorhabditis elegans] ref|NP_494755.1| C01F1.2 [Caenorhabditis elegans] 1.0E-171
blast AAB00716 Hypothetical protein C01F1.2 [Caenorhabditis elegans] ref|NP_494755.1| C01F1.2 [Caenorhabditis elegans] 1.0E-164
blast CAE60115 Hypothetical protein CBG03655 [Caenorhabditis briggsae] 1.0E-159
blast CAE60115 Hypothetical protein CBG03655 [Caenorhabditis briggsae] 1.0E-153
blast EAA10098 ENSANGP00000012964 [Anopheles gambiae str. PEST] ref|XP_314900.2| ENSANGP00000012964 [Anopheles gambiae str. PEST] 9.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR003782 EMBL-EBI Electron transport protein SCO1/SenC 7.4E-45
Pfam IPR003782 EMBL-EBI Electron transport protein SCO1/SenC 7.4E-45
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494755.1 1 93-115
C01F1.2 1 93-115
SNAP00000028116 1 86-108
GENEFINDER00000028123 1 93-115
Sequence
Target Sequence 
>C. ELEGANS:182260_AT
ccttgccgctctattttacatcaagaaaatccgtctggatgagagggaaaaacaccgaaa
acagacggcaggaaaagcgagaatcggtggagaatgggaattgatgaatacagacgggaa
aatggaaggatctcaggaactacgtggaaattggcttctgatgtactttggattcacaaa
ttgcccggatatttgccctgatgagattgagaaaatggtgaaagtcgtggaaattatcga
ggcaaagaaggacgcgacgccgatcgttcccgtattcatttcagtagatcctgagcgaga
ttctgttgctcgagtgaaagaatattgctccgagttctccaacaagctacgtggattcac
tggaaccacagagcaagttaataaagttgcgaaaacgttcagagtatatcatagccaggg
acccaggacaaataagcaagaagatgattatattgtagatcacacggttattatgtacct
aattgacccctctggccaattccacgattattacggacaaaatcgaaaagctgaggagat
cgccaacgttattgaaatgaaagttctcaaataccaagcccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTGCCGCTCTATTTTACATCAAG 641 269 339 Antisense
TTGGCTTCTGATGTACTTTGGATTC 692 705 489 Antisense
CCCGGATATTTGCCCTGATGAGATT 584 259 522 Antisense
AAGAAGGACGCGACGCCGATCGTTC 398 151 583 Antisense
TTCCCGTATTCATTTCAGTAGATCC 118 699 605 Antisense
AATATTGCTCCGAGTTCTCCAACAA 122 175 659 Antisense
GTATATCATAGCCAGGGACCCAGGA 203 453 742 Antisense
TATTATGTACCTAATTGACCCCTCT 342 663 807 Antisense
CTGGCCAATTCCACGATTATTACGG 669 241 830 Antisense
AAGCTGAGGAGATCGCCAACGTTAT 442 149 866 Antisense
GAAAGTTCTCAAATACCAAGCCCAG 174 359 897 Antisense
Sequence Source Affymetrix Proprietary Database