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[182258_at]

Description C15H9.2 /REP_DB=WormBase Gene ID /WP=CE03994 /TR=Q18030 /GB=AAB52662.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 52.9
(-3)
A 		54.6
(-2.9)
A 		74.8
(-2.2)
A 		219.2
(3)
P 		166
B 50.8
(-3)
A 		64.3
(-2.2)
A 		61.4
(-2.4)
P 		154.1
(3)
P 		103
C 42.9
(-3)
A 		52.3
(-2.7)
A 		51.8
(-2.7)
A 		226.2
(3)
P 		183
avr 48.9
(-3) 		57.1
(-2.7) 		62.7
(-2.5) 		199.8
(3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 89
(3)
A 		68.7
(1.1)
A 		78.4
(2)
A 		25
(-3)
A 		61.2
(0.4)
P 		43.4
(-1.3)
A 		64
B 77.4
(3)
A 		30.8
(-2)
A 		21.7
(-3)
A 		41.1
(-0.9)
P 		65.4
(1.7)
P 		34.9
(-1.6)
A 		56
C 62
(-1.2)
P 		79.4
(0.2)
P 		49.1
(-2.2)
A 		114.2
(3)
M 		39.6
(-3)
A 		47.4
(-2.4)
P 		75
avr 76.1
(3) 		59.6
(0.1) 		49.7
(-1.6) 		60.1
(0.2) 		55.4
(-0.6) 		41.9
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 19.2
(-0.8)
A 		11.8
(-3)
A 		19.5
(-0.7)
A 		32.1
(3)
P 		20
B 16.2
(-2.4)
A 		15.9
(-2.5)
A 		14.2
(-3)
P 		32.8
(3)
P 		19
C 14.2
(-3)
A 		15
(-2.8)
A 		18
(-2)
A 		38.1
(3)
P 		24
avr 16.5
(-2.3) 		14.2
(-3) 		17.2
(-2.1) 		34.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 16.4
(0.3)
A 		24.5
(3)
A 		17.1
(0.6)
A 		6.3
(-3)
A 		18.5
(1)
P 		10.6
(-1.6)
A 		18
B 26.9
(3)
A 		10.2
(-1.6)
A 		5.3
(-3)
A 		10.9
(-1.4)
P 		26.6
(2.9)
P 		13
(-0.9)
A 		22
C 23
(2.4)
P 		24.2
(3)
P 		12.5
(-3)
A 		23
(2.4)
M 		12.8
(-2.8)
A 		15.9
(-1.3)
P 		12
avr 22.1
(3) 		19.6
(1.6) 		11.6
(-3) 		13.4
(-2) 		19.3
(1.4) 		13.2
(-2.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182258_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17045
Sequence Type Exemplar sequence
Representative Public ID C15H9.2 NCBI
Target Description C15H9.2 /REP_DB=WormBase Gene ID /WP=CE03994 /TR=Q18030 /GB=AAB52662.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076626 NCBI Caenorhabditis elegans C15H9.2 (C15H9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000042813 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6118734:6120394:1 10/11 None
C15H9.2 ENSEMBL cdna:known chromosome:CEL140:X:6118734:6120394:1 gene:C15H9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6118733-6120394(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15H9.2
Entrez Gene 182641 Entrez gene
SwissProt Q18030 EMBL-EBI
WormBase CE35401 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52662 Hypothetical protein C15H9.2 [Caenorhabditis elegans] ref|NP_509027.2| C15H9.2 [Caenorhabditis elegans] 1.0E-153
blast AAB52662 Hypothetical protein C15H9.2 [Caenorhabditis elegans] ref|NP_509027.2| C15H9.2 [Caenorhabditis elegans] 1.0E-145
blast CAE68874 Hypothetical protein CBG14837 [Caenorhabditis briggsae] 1.0E-108
blast CAE68874 Hypothetical protein CBG14837 [Caenorhabditis briggsae] 1.0E-102
blast CAE73123 Hypothetical protein CBG20505 [Caenorhabditis briggsae] 6.0E-12
blast CAE73123 Hypothetical protein CBG20505 [Caenorhabditis briggsae] 6.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.5E-25
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.1E-20
Sequence
Target Sequence 
>C. ELEGANS:182258_AT
ttgacctgattattcattgcaccgatttcaagtctagttccacttttacctcacaattcg
agcgcagcggagagtcagttgttcatgagtggctgccaggcggtcgccacgtgcaactgg
aaattgaccaaacgattcacgaaagtcaattttccggattggacttcagccagccgtttg
acagttcaaatgttgtgctaaaagttgaagatgaggaatttcacgttctgagcatggctt
ctcaatattttaaagtgttattcaatgggtctttcattgaatcctccgacctaacaaaac
caatcgaactgaaaggaatatcgtcttgttcttttagaaaccttctaaattgtatatatg
gatatccctctgtgttcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGACCTGATTATTCATTGCACCGA 13 703 200 Antisense
GCACCGATTTCAAGTCTAGTTCCAC 397 315 218 Antisense
TTTACCTCACAATTCGAGCGCAGCG 78 661 244 Antisense
GAGCGCAGCGGAGAGTCAGTTGTTC 347 385 259 Antisense
GTTGTTCATGAGTGGCTGCCAGGCG 610 437 277 Antisense
GGTCGCCACGTGCAACTGGAAATTG 417 499 301 Antisense
TTTCCGGATTGGACTTCAGCCAGCC 15 669 350 Antisense
TTCAGCCAGCCGTTTGACAGTTCAA 68 687 364 Antisense
ATTTCACGTTCTGAGCATGGCTTCT 594 15 417 Antisense
GGGTCTTTCATTGAATCCTCCGACC 516 497 466 Antisense
ATATGGATATCCCTCTGTGTTCAGA 648 21 555 Antisense
Sequence Source Affymetrix Proprietary Database