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[182256_at]

Description F45E1.1 /REP_DB=WormBase Gene ID /WP=CE01938 /TR=Q09984 /GB=AAB04898.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 02      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 70      6grp_total > 34      4grp_total > 51      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 209.8
(-3)
P 		408.7
(2.8)
P 		416.6
(3)
P 		302.1
(-0.3)
P 		207
B 360.7
(3)
P 		305
(0.5)
P 		254
(-1.8)
P 		226.5
(-3)
P 		134
C 377.5
(3)
P 		367.2
(2.6)
P 		240.1
(-2.7)
P 		233.5
(-3)
P 		144
avr 316
(0.5) 		360.3
(3) 		303.6
(-0.2) 		254
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 335.8
(3)
P 		308.5
(2)
P 		335.2
(3)
P 		168.7
(-3)
P 		230.6
(-0.8)
P 		187.9
(-2.3)
P 		167
B 325
(3)
P 		217.7
(-1.4)
P 		312.4
(2.5)
P 		187.7
(-2.6)
P 		178
(-3)
P 		213.9
(-1.5)
P 		147
C 337.6
(1.9)
P 		311.8
(1.1)
P 		369.3
(3)
P 		264.3
(-0.5)
P 		189.7
(-3)
P 		198.8
(-2.7)
P 		180
avr 332.8
(2.7) 		279.3
(0.4) 		339
(3) 		206.9
(-2.7) 		199.4
(-3) 		200.2
(-3) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 76.4
(-0)
P 		88.7
(1.1)
P 		108.9
(3)
P 		44.2
(-3)
P 		65
B 115
(3)
P 		75.3
(-0.6)
P 		58.9
(-2)
P 		48.3
(-3)
P 		67
C 125
(3)
P 		105.6
(1.6)
P 		83.7
(0.1)
P 		39.4
(-3)
P 		86
avr 105.5
(3) 		89.9
(1.5) 		83.8
(0.9) 		44
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 61.9
(-1.3)
P 		109.7
(3)
P 		73
(-0.3)
P 		42.8
(-3)
P 		69.6
(-0.6)
P 		45.7
(-2.7)
P 		67
B 113.1
(3)
P 		72.5
(-0.8)
P 		75.9
(-0.5)
P 		49.7
(-3)
P 		72.3
(-0.9)
P 		79.8
(-0.2)
P 		63
C 125.1
(3)
P 		95.1
(0.5)
P 		94
(0.4)
P 		53.2
(-3)
P 		61.4
(-2.3)
P 		66.5
(-1.9)
P 		72
avr 100
(3) 		92.4
(2.1) 		81
(0.8) 		48.6
(-3) 		67.8
(-0.8) 		64
(-1.2) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182256_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17040
Sequence Type Exemplar sequence
Representative Public ID F45E1.1 NCBI
Target Description F45E1.1 /REP_DB=WormBase Gene ID /WP=CE01938 /TR=Q09984 /GB=AAB04898.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076948(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076948 NCBI Caenorhabditis elegans F45E1.1 (F45E1.1) mRNA, complete cds. 11/11 None
SNAP00000004153 ENSEMBL cdna:SNAP chromosome:CEL140:X:8007750:8008816:1 11/11 None
GENEFINDER00000004154 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8007750:8008812:1 11/11 None
F45E1.1 ENSEMBL cdna:known chromosome:CEL140:X:8007750:8008816:1 gene:F45E1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8007748-8008815(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45E1.1
Entrez Gene 185790 Entrez gene
SwissProt Q09984 EMBL-EBI
WormBase CE01938 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04898 Hypothetical protein F45E1.1 [Caenorhabditis elegans] ref|NP_509349.1| F45E1.1 [Caenorhabditis elegans] 1.0E-34
blast CAE70334 Hypothetical protein CBG16869 [Caenorhabditis briggsae] 7.0E-28
Sequence
Target Sequence 
>C. ELEGANS:182256_AT
gaatcgcccacgtgtaaaagagtttgaagatgacgataaggataagcgagacaatgcaga
tgccgcattccgtgagtggttaaagagaaaagcagcagagccaagaacaccaagagcatc
cccatccagagaagctatatctaaacatttgaaagatgaagcccgccaacgtgtcatcaa
ccagtggcacaacaacaaacggttcactgtaaaaatcgatgcatacgtcaatggaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGCCCACGTGTAAAAGAGTTT 390 193 15 Antisense
AAGCGAGACAATGCAGATGCCGCAT 195 149 58 Antisense
ATGCCGCATTCCGTGAGTGGTTAAA 356 41 74 Antisense
AGCAGCAGAGCCAAGAACACCAAGA 369 77 105 Antisense
GAGCCAAGAACACCAAGAGCATCCC 278 385 112 Antisense
AGCATCCCCATCCAGAGAAGCTATA 111 79 129 Antisense
ATTTGAAAGATGAAGCCCGCCAACG 491 15 161 Antisense
CCGCCAACGTGTCATCAACCAGTGG 277 261 177 Antisense
AACCAGTGGCACAACAACAAACGGT 456 147 193 Antisense
AACGGTTCACTGTAAAAATCGATGC 489 143 212 Antisense
AATCGATGCATACGTCAATGGAACA 442 167 228 Antisense
Sequence Source Affymetrix Proprietary Database