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[182255_at]

Description Y8G1A.1 /REP_DB=WormBase Gene ID /WP=CE18355 /TR=O44886 /GB=AAB95048.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 3
(-3)
A 		36.2
(3)
A 		3.8
(-2.9)
A 		10.1
(-1.7)
A 		33
B 5
(-3)
A 		40.4
(3)
A 		27.6
(0.8)
A 		28.9
(1.1)
A 		35
C 46.9
(3)
A 		45.2
(2.7)
A 		21.5
(-0.9)
A 		7.7
(-3)
A 		39
avr 18.3
(-2.4) 		40.6
(3) 		17.6
(-2.5) 		15.6
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 5.9
(-2)
A 		14.1
(-0.1)
A 		1.8
(-3)
A 		27.4
(3)
A 		25.5
(2.6)
A 		12.4
(-0.5)
A 		26
B 23
(0.7)
A 		12.2
(-1.3)
A 		13.5
(-1.1)
A 		9
(-1.9)
A 		3.4
(-3)
A 		35.1
(3)
A 		32
C 17.9
(-1.8)
A 		18.2
(-1.8)
A 		16.3
(-2)
A 		25
(-1)
A 		58.1
(3)
A 		8
(-3)
A 		50
avr 15.6
(-1.3) 		14.8
(-1.6) 		10.5
(-3) 		20.5
(0.2) 		29
(3) 		18.5
(-0.4) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.1
(-2.9)
A 		7.9
(3)
A 		1
(-3)
A 		1.5
(-2.6)
A 		7
B 1.6
(-3)
A 		10
(3)
A 		6.4
(0.4)
A 		6.2
(0.3)
A 		8
C 15.5
(3)
A 		13
(1.9)
A 		7.5
(-0.4)
A 		1.3
(-3)
A 		14
avr 6.1
(-0.5) 		10.3
(3) 		5
(-1.4) 		3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.1
(-2.4)
A 		5
(0.8)
A 		0.4
(-3)
A 		6.9
(2.3)
A 		7.7
(3)
A 		3
(-0.9)
A 		7
B 8
(0.4)
A 		4.1
(-1.6)
A 		3.3
(-2)
A 		2.4
(-2.5)
A 		1.4
(-3)
A 		13.1
(3)
A 		12
C 6.6
(-1.5)
A 		5.6
(-1.9)
A 		4.1
(-2.5)
A 		5
(-2.1)
A 		18.8
(3)
A 		2.7
(-3)
A 		16
avr 5.2
(-0.7) 		4.9
(-0.9) 		2.6
(-3) 		4.8
(-1) 		9.3
(3) 		6.3
(0.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182255_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.238
Sequence Type Exemplar sequence
Representative Public ID Y8G1A.1 NCBI
Target Description Y8G1A.1 /REP_DB=WormBase Gene ID /WP=CE18355 /TR=O44886 /GB=AAB95048.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058810 NCBI Caenorhabditis elegans Y8G1A.1 (Y8G1A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000024875 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3746677:3748147:1 10/11 None
Y8G1A.1 ENSEMBL cdna:known chromosome:CEL140:I:3746677:3748147:1 gene:Y8G1A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024870 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3746676-3748147(+) 95.81 100.0
Public Domain and Genome References
Gene Title
Ensembl Y8G1A.1
Entrez Gene 189404 Entrez gene
WormBase CE39117 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491211 Y8G1A.1 [Caenorhabditis elegans] 2.0E-66
blast NP_491211 Y8G1A.1 [Caenorhabditis elegans] 3.0E-64
blast AAB95048 Hypothetical protein Y8G1A.1 [Caenorhabditis elegans] 4.0E-51
blast CAB57901 Hypothetical protein R08A2.1 [Caenorhabditis elegans] ref|NP_506634.1| R08A2.1 [Caenorhabditis elegans] 1.0E-50
blast AAB95048 Hypothetical protein Y8G1A.1 [Caenorhabditis elegans] 2.0E-50
blast CAB57901 Hypothetical protein R08A2.1 [Caenorhabditis elegans] ref|NP_506634.1| R08A2.1 [Caenorhabditis elegans] 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 2.0E-10
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 5.0E-93
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 3.2E-12
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 5.0E-93
Sequence
Target Sequence 
>C. ELEGANS:182255_AT
gaggcacttactacaatccaaattatcaaactttggcgggtttgaataatgacgcagtgt
ttggaccaggaggcggagagggtggaccaccgagagctccagctccaggctcaaaaccag
gaatggccggaactcaggatcccaactatcagacactggcaggtctcaataatgatgctg
ttttcggaggtggagcaggcgggcctccaaaggctccagcggtcggaggaaaagctgcaa
ccaatgatccaaattatcagactctcgctggactcaacaacgacgaaattttcaagccgg
gcggcgctggagcgccagctggtccaaaagccccacttgctccaggtgcaaaagctggaa
caaacgacccgaactaccaaactcttgctggactcaacaatgatgacattttcaagaaag
gtggaggtggtggcggtggtggtggacctccacgtgcttctgctcaagtcggtgcaaaag
ctgcgactcacgaccccaattatcaaacgttggccgggttgaatcaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCACTTACTACAATCCAAATTA 85 405 74 Antisense
GAATAATGACGCAGTGTTTGGACCA 367 325 117 Antisense
CAGGAGGCGGAGAGGGTGGACCACC 292 207 140 Antisense
CGGAACTCAGGATCCCAACTATCAG 473 241 201 Antisense
ACACTGGCAGGTCTCAATAATGATG 220 111 226 Antisense
TTTTCGGAGGTGGAGCAGGCGGGCC 46 667 254 Antisense
CTCCAAAGGCTCCAGCGGTCGGAGG 529 235 278 Antisense
AATTTTCAAGCCGGGCGGCGCTGGA 203 173 360 Antisense
GGTGCAAAAGCTGCGACTCACGACC 349 501 544 Antisense
ACTCACGACCCCAATTATCAAACGT 676 97 559 Antisense
AACGTTGGCCGGGTTGAATCAGGAT 609 143 579 Antisense
Sequence Source Affymetrix Proprietary Database