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[182254_s_at]

Description T05C1.4 /REP_DB=WormBase Gene ID /WP=CE02862 /TR=Q22221 /GB=AAA68393.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 31      4grp_high_8_8 > 20      6grp_highest_nonorm > 0      6grp_total > 28      4grp_total > 11      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3280
1 2 3 4 range
A 2608
(-1.2)
P 		2585.6
(-1.2)
P 		1672.4
(-3)
P 		4744.8
(3)
P 		3072
B 2568
(-1.4)
P 		2506.1
(-1.5)
P 		1689.5
(-3)
P 		4952.3
(3)
P 		3263
C 2597.1
(-1.1)
P 		2560.1
(-1.2)
P 		1800.3
(-3)
P 		4268.5
(3)
P 		2468
avr 2591
(-1.2) 		2550.6
(-1.3) 		1720.7
(-3) 		4655.2
(3) 		2935

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 849
1 2 3 4 5 6 range
A 1904.1
(3)
P 		1699.9
(1.6)
P 		1055.2
(-3)
P 		1238.7
(-1.7)
P 		1531.6
(0.4)
P 		1523.7
(0.3)
P 		849
B 1889.7
(3)
P 		1614.8
(0.2)
P 		1299
(-3)
P 		1319.7
(-2.8)
P 		1335.9
(-2.6)
P 		1368.9
(-2.3)
P 		591
C 1834.6
(3)
P 		1445.5
(-0.9)
P 		1332.4
(-2)
P 		1229.9
(-3)
P 		1390.3
(-1.4)
P 		1440.2
(-0.9)
P 		605
avr 1876.1
(3) 		1586.7
(0.3) 		1228.9
(-3) 		1262.8
(-2.7) 		1419.3
(-1.2) 		1444.3
(-1) 		647
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 664
1 2 3 4 range
A 949.6
(3)
P 		561.3
(-1.5)
P 		437.2
(-3)
P 		694.5
(0)
P 		512
B 818.9
(0.9)
P 		618.9
(-0.9)
P 		391.5
(-3)
P 		1055.3
(3)
P 		664
C 859.7
(3)
P 		736
(-0.2)
P 		627.5
(-3)
P 		719.7
(-0.6)
P 		232
avr 876.1
(3) 		638.7
(-0.6) 		485.4
(-3) 		823.2
(2.2) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 450
1 2 3 4 5 6 range
A 351
(-1.1)
P 		604.6
(3)
P 		229.8
(-3)
P 		314.2
(-1.6)
P 		462.2
(0.7)
P 		371
(-0.7)
P 		375
B 657.5
(3)
P 		537.5
(0.9)
P 		315.4
(-3)
P 		349.5
(-2.4)
P 		542.8
(1)
P 		510.5
(0.4)
P 		342
C 680
(3)
P 		441.1
(-0.3)
P 		339.1
(-1.7)
P 		247.3
(-3)
P 		449.9
(-0.2)
P 		482.1
(0.3)
P 		433
avr 562.8
(3) 		527.7
(2.2) 		294.8
(-3) 		303.7
(-2.8) 		485
(1.3) 		454.5
(0.6) 		268
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182254_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4816
Sequence Type Exemplar sequence
Representative Public ID T05C1.4 NCBI
Target Description T05C1.4 /REP_DB=WormBase Gene ID /WP=CE02862 /TR=Q22221 /GB=AAA68393.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027143(11), NM_062394(11), NM_062395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027143 NCBI Caenorhabditis elegans T05C1.4c (T05C1.4) mRNA, complete cds. 11/11 None
NM_062394 NCBI Caenorhabditis elegans T05C1.4a (T05C1.4) mRNA, complete cds. 11/11 A 
NM_062395 NCBI Caenorhabditis elegans T05C1.4b (T05C1.4) mRNA, complete cds. 11/11 A 
SNAP00000008478 ENSEMBL cdna:SNAP chromosome:CEL140:II:4491356:4493370:-1 11/11 None
GENEFINDER00000008486 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4491356:4493370:-1 11/11 None
T05C1.4c ENSEMBL cdna:known chromosome:CEL140:II:4491142:4493370:-1 gene:T05C1.4 11/11 None
T05C1.4a ENSEMBL cdna:known chromosome:CEL140:II:4491153:4505134:-1 gene:T05C1.4 11/11 A 
T05C1.4b ENSEMBL cdna:known chromosome:CEL140:II:4491388:4505134:-1 gene:T05C1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4491354-4493369(-) 100.0 100.0
Public Domain and Genome References
Ensembl T05C1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38602 Hypothetical protein T05C1.4a [Caenorhabditis elegans] ref|NP_494795.2| T05C1.4a [Caenorhabditis elegans] 0.0
blast AAO38603 Hypothetical protein T05C1.4b [Caenorhabditis elegans] ref|NP_494796.2| T05C1.4b [Caenorhabditis elegans] 0.0
blast T16812 hypothetical protein T05C1.6 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-4
Pfam IPR005559 EMBL-EBI CG-1 domain 7.0E-18
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 4.5E-4
Sequence
Target Sequence 
>C. ELEGANS:182254_S_AT
ggaggacattgaacgacgggctgcgttgaagattcagggatgctatagaagatacaaaca
attttgctatttcaagaagcttcacaatgccgcaattgttgtgcagaagcattttagaat
gagaaagcgcgacgacaaagaagaaggagctgttgaagcagttatcgccagtgtcccaga
acatccgactcttgacggacaatccatttgcattcaagtcccgaagaccaattcgactat
gctccgcgaaagagccgccaccacgattcaagtcgcctaccgttatagacaccgaaaacg
tcaagccgccgccaggaagatccagaattttatgcgacaaaatcgtaataatgtaaatat
tgatgatggtcatactcaacatctaattgcggaaaatgcatgcgctaaacgaagacggta
cgtcgcctgcccgcaaaccagcggagatcaacgcaacaaacgagattctgatggtgaacg
gaaaagagatgctcaccacgatgccccagaattcattccgatcggtgcaacaccatcctc
aacaacaattccacatcgaccaacacaacgtcatcatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGACATTGAACGACGGGCTGCG 565 515 177 Antisense
CAAGAAGCTTCACAATGCCGCAATT 368 185 249 Antisense
GTTGAAGCAGTTATCGCCAGTGTCC 573 437 328 Antisense
TCCCAGAACATCCGACTCTTGACGG 306 599 350 Antisense
AATCCATTTGCATTCAAGTCCCGAA 558 167 377 Antisense
GACTATGCTCCGCGAAAGAGCCGCC 548 371 411 Antisense
GTCGCCTACCGTTATAGACACCGAA 180 475 448 Antisense
AAAAGAGATGCTCACCACGATGCCC 238 133 658 Antisense
CATTCCGATCGGTGCAACACCATCC 37 217 690 Antisense
CCTCAACAACAATTCCACATCGACC 260 267 713 Antisense
TCGACCAACACAACGTCATCATCCA 161 603 732 Antisense
Sequence Source Affymetrix Proprietary Database