[Home] | [Total List]

[182253_at] cytochrome P450

Description Y80D3A.5 /REP_DB=WormBase Gene ID /WP=CE23108 /TR=Q9U1R5 /GB=CAB60436.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 62      6grp_highest_nonorm > 90      6grp_total > 72      4grp_total > 48      6grp_highest_sub > 04      6grp_cgc > 74      6grp_high1_sub > 03      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 66
(-3)
A 		161.9
(1.9)
P 		183.9
(3)
M 		96.3
(-1.5)
A 		118
B 72.2
(-3)
A 		139.6
(0.7)
P 		182.3
(3)
P 		89.2
(-2.1)
P 		110
C 63.9
(-3)
A 		200.6
(2.6)
M 		210.3
(3)
P 		137
(-0)
P 		146
avr 67.4
(-3) 		167.4
(1.8) 		192.2
(3) 		107.5
(-1.1) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 76.9
(-3)
P 		166.1
(0.3)
P 		205.1
(1.7)
P 		241.3
(3)
P 		156.3
(-0.1)
P 		84.3
(-2.7)
P 		164
B 103.7
(-3)
P 		157.5
(-0.2)
P 		218.9
(3)
P 		168.1
(0.4)
P 		197.8
(1.9)
P 		124.5
(-1.9)
P 		115
C 138.3
(0.2)
P 		157.7
(1.7)
P 		166.6
(2.3)
P 		175.6
(3)
P 		164.2
(2.1)
P 		95.6
(-3)
P 		80
avr 106.3
(-2.7) 		160.4
(0.7) 		196.9
(3) 		195
(2.9) 		172.8
(1.5) 		101.5
(-3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 24
(-1.3)
A 		35.1
(0.7)
P 		48.1
(3)
M 		14.1
(-3)
A 		34
B 23
(-2)
A 		34.5
(1)
P 		42.2
(3)
P 		19
(-3)
P 		23
C 21.2
(-3)
A 		57.7
(1.2)
M 		73.3
(3)
P 		23.1
(-2.8)
P 		52
avr 22.7
(-2.3) 		42.4
(1) 		54.5
(3) 		18.7
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 14.2
(-3)
P 		59.1
(2.7)
P 		44.7
(0.9)
P 		61.2
(3)
P 		47.2
(1.2)
P 		20.5
(-2.2)
P 		47
B 36.1
(-3)
P 		52.4
(-0.8)
P 		53.2
(-0.7)
P 		44.5
(-1.9)
P 		80.4
(3)
P 		46.4
(-1.6)
P 		44
C 51.3
(2.5)
P 		48.1
(1.6)
P 		42.4
(-0)
P 		35.3
(-2.1)
P 		53.1
(3)
P 		32
(-3)
P 		21
avr 33.9
(-2.8) 		53.2
(1.5) 		46.8
(0) 		47
(0.1) 		60.2
(3) 		33
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182253_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14154
Sequence Type Exemplar sequence
Representative Public ID Y80D3A.5 NCBI
Target Description Y80D3A.5 /REP_DB=WormBase Gene ID /WP=CE23108 /TR=Q9U1R5 /GB=CAB60436.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075287(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075287 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-42A1) (cyp-42A1) mRNA, complete cds. 11/11 None
GENEFINDER00000017386 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18914615:18920406:1 11/11 None
Y80D3A.5 ENSEMBL cdna:known chromosome:CEL140:V:18914612:18920406:1 gene:Y80D3A.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017347 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18914614-18919337(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-42A1
Ensembl Y80D3A.5
Entrez Gene 180236 Entrez gene
SwissProt Q9U1R5 EMBL-EBI
WormBase CE36516 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60436 Hypothetical protein Y80D3A.5 [Caenorhabditis elegans] ref|NP_507688.2| CYtochrome P450 family member (cyp-42A1) [Caenorhabditis elegans] 0.0
blast CAE72981 Hypothetical protein CBG20323 [Caenorhabditis briggsae] 0.0
blast XP_684482 PREDICTED: similar to family 4 cytochrome P450 isoform 1 [Danio rerio] 1.0E-116
Protein Families
Method ID Description E-Value
p450 CP11_MOUSE Animalia; CYP1A-1; mou; CP11_MOUSE; Mus musculus; P00184 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.4E-122
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507688.2 2 4-21,77-99
Y80D3A.5 2 4-21,77-99
GENEFINDER00000017386 2 4-21,77-99
Sequence
Target Sequence 
>C. ELEGANS:182253_AT
ggtagatgctgctggaggtgtagagcaacttttggctcaggaaacagctgaaggacgaag
gcggatggctttcctagatctcatgttggatatgaattcgaagggagaacttccgatgga
agggatttgtgaagaagttgatacttttacatttgaaggccacgacacaacatcagccgc
aatgaattggttcctccacttaatgggagcaaatccagaaatccaatcaaaagttcaaaa
agaaatcgacgaagttttgggagaagccgatcggccagtcagctacgaggatttgggaaa
actgaaatatttggaagcctgtttcaaagaaactctgagattatatccatcagtaccatt
aattgcaagacaatgtgttgaagatattcaagtacgtggacatacacttccatctggaac
tgctgttgttatggtaccatcaatggtacataaggaccctagatattgggatgatccgga
gattttcaatccggaaagatttattacgggagagctgaaacatccatatgcttatattcc
atttagtgcgggatccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAGATGCTGCTGGAGGTGTAGAG 212 503 795 Antisense
GGACGAAGGCGGATGGCTTTCCTAG 311 499 847 Antisense
GGCTTTCCTAGATCTCATGTTGGAT 173 537 861 Antisense
GACACAACATCAGCCGCAATGAATT 145 367 958 Antisense
GAATTGGTTCCTCCACTTAATGGGA 610 323 978 Antisense
GTTTTGGGAGAAGCCGATCGGCCAG 492 433 1048 Antisense
GATCGGCCAGTCAGCTACGAGGATT 542 415 1063 Antisense
ATATCCATCAGTACCATTAATTGCA 428 21 1137 Antisense
GTACGTGGACATACACTTCCATCTG 469 459 1186 Antisense
GAACTGCTGTTGTTATGGTACCATC 226 349 1211 Antisense
TATTCCATTTAGTGCGGGATCCAGA 48 663 1329 Antisense
Sequence Source Affymetrix Proprietary Database