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[182252_s_at]

Description K02A6.3 /REP_DB=WormBase Gene ID /WP=CE04686 /TR=Q21112 /GB=AAC47062.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 72      6grp_total > 38      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 588
1 2 3 4 range
A 884.2
(3)
P 		495.6
(-1.4)
P 		524.1
(-1.1)
P 		353.9
(-3)
P 		530
B 941.8
(3)
P 		486.9
(-2.5)
P 		501.1
(-2.4)
P 		449.5
(-3)
P 		492
C 923
(3)
P 		486.1
(-1.9)
P 		492.8
(-1.8)
P 		389.1
(-3)
P 		534
avr 916.3
(3) 		489.5
(-1.9) 		506
(-1.7) 		397.5
(-3) 		519

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 432.7
(1.1)
P 		510.8
(3)
P 		263.7
(-3)
P 		395.3
(0.2)
P 		461.9
(1.8)
P 		440.9
(1.3)
P 		247
B 384.5
(0.9)
P 		452.6
(3)
P 		262.1
(-3)
P 		399.2
(1.3)
P 		397.8
(1.3)
P 		384.4
(0.9)
P 		191
C 414.3
(0.7)
P 		452.5
(2.6)
P 		374.1
(-1.2)
P 		405
(0.3)
P 		337.2
(-3)
P 		460.7
(3)
P 		124
avr 410.5
(0.9) 		472
(3) 		300
(-3) 		399.8
(0.5) 		399
(0.5) 		428.7
(1.5) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 321.9
(3)
P 		107.6
(-1.8)
P 		137
(-1.1)
P 		51.8
(-3)
P 		270
B 300.3
(3)
P 		120.3
(-2.3)
P 		116.1
(-2.4)
P 		95.8
(-3)
P 		205
C 305.5
(3)
P 		139.8
(-1.1)
P 		171.8
(-0.3)
P 		65.6
(-3)
P 		240
avr 309.2
(3) 		122.6
(-1.7) 		141.6
(-1.2) 		71.1
(-3) 		238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 79.8
(-1.9)
P 		181.7
(3)
P 		57.4
(-3)
P 		100.3
(-0.9)
P 		139.4
(1)
P 		107.4
(-0.6)
P 		124
B 133.8
(1.3)
P 		150.7
(2.3)
P 		63.7
(-3)
P 		105.7
(-0.4)
P 		161.6
(3)
P 		143.3
(1.9)
P 		98
C 153.6
(3)
P 		138.1
(1.7)
P 		95.2
(-1.9)
P 		81.5
(-3)
P 		109.1
(-0.7)
P 		154.2
(3)
P 		73
avr 122.4
(0.6) 		156.8
(3) 		72.1
(-3) 		95.8
(-1.3) 		136.7
(1.6) 		135
(1.5) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182252_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17035
Sequence Type Exemplar sequence
Representative Public ID K02A6.3 NCBI
Target Description K02A6.3 /REP_DB=WormBase Gene ID /WP=CE04686 /TR=Q21112 /GB=AAC47062.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029575(9), NM_001029574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029575 NCBI Caenorhabditis elegans K02A6.3b (K02A6.3) mRNA, complete cds. 9/11 None
NM_001029574 NCBI Caenorhabditis elegans K02A6.3a (K02A6.3) mRNA, complete cds. 11/11 None
K02A6.3b.1 ENSEMBL cdna:known chromosome:CEL140:X:8228010:8231852:-1 gene:K02A6.3 9/11 None
K02A6.3b.2 ENSEMBL cdna:known chromosome:CEL140:X:8228033:8229519:-1 gene:K02A6.3 9/11 None
K02A6.3a ENSEMBL cdna:known chromosome:CEL140:X:8228204:8231869:-1 gene:K02A6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011091 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8228202-8231761(-) 100.0 100.0
Public Domain and Genome References
Ensembl K02A6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47062 Hypothetical protein K02A6.3a [Caenorhabditis elegans] ref|NP_001024745.1| K02A6.3a [Caenorhabditis elegans] 0.0
blast CAE74861 Hypothetical protein CBG22716 [Caenorhabditis briggsae] 0.0
blast AAC47062 Hypothetical protein K02A6.3a [Caenorhabditis elegans] ref|NP_001024745.1| K02A6.3a [Caenorhabditis elegans] 3.0E-91
blast AAP82648 Hypothetical protein K02A6.3b [Caenorhabditis elegans] ref|NP_001024746.1| K02A6.3b [Caenorhabditis elegans] 3.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.3E-10
Sequence
Target Sequence 
>C. ELEGANS:182252_S_AT
agtagccagtcgacggatatttgccggaatgcgtgggacatgttcgtcaagcagaacatg
gatcgaacacgtgtctggcttatcctacgaggaaaacccaaaatgtcactgattatccaa
ccaggcgccccgatatacggaataaaaatggaaaacagtgccggacagctgacaatggag
cttgcagagcagattgcaaactactacggtgccacacttcgccacttcattcaatgtgga
ttagaaagaatgaaaagaggaaagaaaatggaagaacgtgttgactccgcgctcattgaa
attgttagcagatgcccgaacttggagcggcttgcctgtcgtgaaagaatgtcctatgga
acagcagtgattctttcggtgtacgcagagagaattggctttggattatggattagaaaa
aatgcgctgttgaaacgaatttgctggtgccgacttgatatggaagcgcaggcaattcac
tttgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTAGCCAGTCGACGGATATTTGCC 120 63 859 Antisense
GATCGAACACGTGTCTGGCTTATCC 55 417 919 Antisense
GTCACTGATTATCCAACCAGGCGCC 245 465 963 Antisense
TGCAAACTACTACGGTGCCACACTT 622 575 1053 Antisense
ACACTTCGCCACTTCATTCAATGTG 219 111 1072 Antisense
TTGACTCCGCGCTCATTGAAATTGT 567 703 1139 Antisense
GCAGATGCCCGAACTTGGAGCGGCT 43 313 1166 Antisense
GCGGCTTGCCTGTCGTGAAAGAATG 492 293 1185 Antisense
GGAACAGCAGTGATTCTTTCGGTGT 665 527 1216 Antisense
ATTTGCTGGTGCCGACTTGATATGG 104 17 1297 Antisense
GAAGCGCAGGCAATTCACTTTGACT 35 345 1321 Antisense
Sequence Source Affymetrix Proprietary Database