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[182251_at]

Description Y37H2A.9 /REP_DB=WormBase Gene ID /WP=CE24215 /TR=Q9U2N9 /GB=CAB60571.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 40      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 34.8
(2.5)
A 		11.9
(-3)
A 		36.9
(3)
A 		27.2
(0.7)
A 		25
B 23.6
(-3)
A 		69.4
(3)
A 		45.1
(-0.2)
A 		31
(-2)
A 		46
C 35.6
(-1.8)
A 		29.9
(-3)
A 		50
(1.1)
A 		59.3
(3)
A 		29
avr 31.3
(-3) 		37.1
(-0.3) 		44
(3) 		39.2
(0.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 43
(0.1)
A 		28
(-3)
A 		46.6
(0.9)
A 		56.8
(3)
A 		41.8
(-0.1)
A 		35.7
(-1.4)
A 		29
B 19.1
(-3)
A 		23
(-2.6)
A 		36.4
(-1.1)
A 		57.5
(1.1)
A 		57.3
(1.1)
P 		74.7
(3)
P 		56
C 43.2
(0.2)
A 		44.7
(0.4)
A 		18.9
(-3)
A 		40.7
(-0.1)
A 		63.1
(2.9)
A 		64.1
(3)
P 		45
avr 35.1
(-2.3) 		31.9
(-3) 		34
(-2.5) 		51.7
(1.5) 		54.1
(2.1) 		58.2
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.7
(3)
A 		2.6
(-3)
A 		9.6
(1.2)
A 		4
(-2.2)
A 		10
B 7.5
(-2.5)
A 		17.1
(3)
A 		10.4
(-0.8)
A 		6.6
(-3)
A 		11
C 11.8
(-0.8)
A 		8.6
(-3)
A 		17.4
(3)
A 		10
(-2)
A 		9
avr 10.7
(1.1) 		9.4
(-0.3) 		12.5
(3) 		6.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 7.9
(-3)
A 		10
(-1.1)
A 		10.1
(-1)
A 		14.4
(3)
A 		12.6
(1.3)
A 		8.7
(-2.3)
A 		7
B 6.7
(-3)
A 		7.7
(-2.7)
A 		8.8
(-2.4)
A 		15.2
(-0.6)
A 		23.3
(1.7)
P 		27.8
(3)
P 		21
C 16
(1)
A 		13.6
(0.2)
A 		4.8
(-3)
A 		8.2
(-1.8)
A 		20.4
(2.6)
A 		21.5
(3)
P 		17
avr 10.2
(-1.8) 		10.4
(-1.7) 		7.9
(-3) 		12.6
(-0.5) 		18.8
(2.7) 		19.3
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182251_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14703
Sequence Type Exemplar sequence
Representative Public ID Y37H2A.9 NCBI
Target Description Y37H2A.9 /REP_DB=WormBase Gene ID /WP=CE24215 /TR=Q9U2N9 /GB=CAB60571.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075140(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075140 NCBI Caenorhabditis elegans Y37H2A.9 (Y37H2A.9) mRNA, complete cds. 11/11 None
GENEFINDER00000043025 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18139278:18140498:-1 11/11 None
Y37H2A.9 ENSEMBL cdna:known chromosome:CEL140:V:18139278:18140498:-1 gene:Y37H2A.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043011 4/11 Cross Hyb Matching Probes None
SNAP00000043012 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18139277-18140498(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H2A.9
Entrez Gene 189632 Entrez gene
SwissProt Q9U2N9 EMBL-EBI
WormBase CE24215 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60571 Hypothetical protein Y37H2A.9 [Caenorhabditis elegans] ref|NP_507541.1| Y37H2A.9 [Caenorhabditis elegans] 1.0E-117
blast AAK31412 Hypothetical protein C16A11.6 [Caenorhabditis elegans] ref|NP_494746.2| C16A11.6 [Caenorhabditis elegans] 4.0E-39
blast AAB09127 Hypothetical protein M02B7.1 [Caenorhabditis elegans] ref|NP_500419.1| M02B7.1 [Caenorhabditis elegans] 4.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507541.1 1 28-47
Y37H2A.9 1 28-47
GENEFINDER00000043025 1 28-47
Sequence
Target Sequence 
>C. ELEGANS:182251_AT
gagtagaatactcgcttggcactgagaacaagttcaaagctccattcactctggcgatga
agcagctcgagggacgacgcccgcagatgaatgttgactggttggattttccagaagatg
gtctcattcttgatcttccgcagtccttcgagaaattcaaactttcagttgtcccacgtg
agctattccacgccatcgaaactctaccgaacgaattgatcgaagttgaggtggagggtg
ttgaggttatcgattttctcaatgtgattgacgctttgctcaaacaagacttgaaagctg
acacaactcgtagcttcgtcatacgggatgccaatttggtctcggatttattcaaagtat
tcactctactggcagaaggagaagatccggtgatttatgacgatgatgatgaagacgaag
aggatgagcatagcagatgcgaggaattcccaaatgaaatcgcattcagtttgaacgatg
cgatgttcatttctgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTAGAATACTCGCTTGGCACTGA 322 399 281 Antisense
CAAGTTCAAAGCTCCATTCACTCTG 52 185 309 Antisense
ATGAAGCAGCTCGAGGGACGACGCC 601 43 337 Antisense
GACGACGCCCGCAGATGAATGTTGA 210 379 353 Antisense
AAGATGGTCTCATTCTTGATCTTCC 348 155 395 Antisense
ATCTTCCGCAGTCCTTCGAGAAATT 562 31 413 Antisense
TCAAACTTTCAGTTGTCCCACGTGA 500 629 437 Antisense
ACGCCATCGAAACTCTACCGAACGA 76 91 470 Antisense
GACACAACTCGTAGCTTCGTCATAC 7 367 580 Antisense
GATGCCAATTTGGTCTCGGATTTAT 222 415 607 Antisense
AACGATGCGATGTTCATTTCTGCTG 249 145 754 Antisense
Sequence Source Affymetrix Proprietary Database