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[182250_at]

Description D1007.5 /REP_DB=WormBase Gene ID /WP=CE09040 /TR=O01870 /GB=AAK18913.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 82      6grp_total > 49      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 318.6
(1)
P 		367.6
(3)
P 		278.8
(-0.6)
P 		219.6
(-3)
P 		148
B 337.6
(3)
P 		269.6
(-2.2)
P 		297
(-0.1)
P 		259.4
(-3)
P 		78
C 252.8
(0.6)
P 		270.3
(1.8)
P 		289.3
(3)
P 		196.3
(-3)
P 		93
avr 303
(3) 		302.5
(3) 		288.4
(1.9) 		225.1
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 471.5
(3)
P 		290.6
(-0.7)
P 		181.7
(-3)
P 		275.5
(-1.1)
P 		333.1
(0.1)
P 		398.9
(1.5)
P 		290
B 355.1
(2.3)
P 		314.9
(0.9)
P 		203.6
(-3)
P 		309.4
(0.7)
P 		301.5
(0.5)
P 		373.8
(3)
P 		170
C 372.6
(3)
P 		285.3
(-1.7)
P 		262.3
(-3)
P 		307.4
(-0.5)
P 		298.9
(-1)
P 		351.5
(1.9)
P 		110
avr 399.7
(3) 		296.9
(-0.4) 		215.9
(-3) 		297.4
(-0.3) 		311.2
(0.1) 		374.7
(2.2) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 116
(3)
P 		79.8
(0.4)
P 		72.9
(-0.1)
P 		32.1
(-3)
P 		84
B 107.7
(3)
P 		66.6
(-1.7)
P 		68.8
(-1.5)
P 		55.3
(-3)
P 		52
C 83.7
(1.5)
P 		77.7
(1)
P 		100.8
(3)
P 		33.1
(-3)
P 		68
avr 102.5
(3) 		74.7
(0.3) 		80.8
(0.9) 		40.2
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 86.9
(1.4)
P 		103.4
(3)
P 		39.6
(-3)
P 		69.9
(-0.2)
P 		100.5
(2.7)
P 		97.1
(2.4)
P 		64
B 123.6
(1.9)
P 		104.8
(0.7)
P 		49.4
(-3)
P 		82
(-0.8)
P 		122.5
(1.9)
P 		139.4
(3)
P 		90
C 138.1
(3)
P 		87.1
(-1)
P 		66.8
(-2.6)
P 		61.8
(-3)
P 		96.7
(-0.3)
P 		117.7
(1.4)
P 		76
avr 116.2
(2.8) 		98.4
(1.2) 		51.9
(-3) 		71.2
(-1.3) 		106.6
(2) 		118.1
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182250_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1568
Sequence Type Exemplar sequence
Representative Public ID D1007.5 NCBI
Target Description D1007.5 /REP_DB=WormBase Gene ID /WP=CE09040 /TR=O01870 /GB=AAK18913.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025900(11), NM_001025901(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025900 NCBI Caenorhabditis elegans D1007.5a (D1007.5) mRNA, complete cds. 11/11 None
NM_001025901 NCBI Caenorhabditis elegans D1007.5b (D1007.5) mRNA, complete cds. 11/11 None
GENEFINDER00000011312 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4580982:4583805:-1 11/11 None
SNAP00000011280 ENSEMBL cdna:SNAP chromosome:CEL140:I:4580993:4583805:-1 11/11 None
D1007.5a.1 ENSEMBL cdna:known chromosome:CEL140:I:4580693:4583805:-1 gene:D1007.5 11/11 None
D1007.5b.2 ENSEMBL cdna:known chromosome:CEL140:I:4580734:4583811:-1 gene:D1007.5 11/11 None
D1007.5b.1 ENSEMBL cdna:known chromosome:CEL140:I:4580734:4583815:-1 gene:D1007.5 11/11 None
D1007.5a.2 ENSEMBL cdna:known chromosome:CEL140:I:4580904:4583805:-1 gene:D1007.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4580992-4583805(-) 93.18 100.0
Public Domain and Genome References
Ensembl D1007.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18913 Hypothetical protein D1007.5a [Caenorhabditis elegans] ref|NP_001021071.1| D1007.5a [Caenorhabditis elegans] 0.0
blast T30924 hypothetical protein D1007.5 - Caenorhabditis elegans 0.0
blast CAE74521 Hypothetical protein CBG22275 [Caenorhabditis briggsae] 0.0
blast AAO61426 Hypothetical protein D1007.5b [Caenorhabditis elegans] ref|NP_001021072.1| D1007.5b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021071.1 8 45-67,87-109,130-152,167-189,256-275,295-317,403-425,429-446
NP_001021072.1 6 45-67,87-109,130-152,167-189,256-275,295-317
D1007.5a.1 8 45-67,87-109,130-152,167-189,256-275,295-317,403-425,429-446
D1007.5b.2 6 45-67,87-109,130-152,167-189,256-275,295-317
D1007.5b.1 6 45-67,87-109,130-152,167-189,256-275,295-317
D1007.5a.2 8 45-67,87-109,130-152,167-189,256-275,295-317,403-425,429-446
GENEFINDER00000011312 6 45-67,87-109,130-152,167-189,256-275,295-317
SNAP00000011280 7 45-67,102-124,139-161,228-247,267-289,375-397,401-418
Sequence
Target Sequence 
>C. ELEGANS:182250_AT
aattgtcgtcggattgactgccttctctctctacgtggcatatctatctcctctaaatta
tttggatcttctacaccgagcagctattcatctcggatcttggcatcaaattgaaggtcc
acgaattggccatactggaagtatgagctcggctccaacgccatggagcgagttttgtct
ctataatgacggagagactgttcaaatgccggacggcaggtgctatcgagccaaatcttc
gaattcgataagaactgtggccgcacatccggaaagttctcggcataacactttctttaa
agtgctccgaaaaccgaacaatctgatcaatatcatgtgctcgttcgaattcctgctgat
attcattcaattctggatgcttgtgctcaccaacgactggcaacacattgtcaccttcgt
gttgctcatgtttgcgaattacttgctcttcgccaagcttttcaaagacaaaataattct
gagccggatctacgaacctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGTCGTCGGATTGACTGCCTTC 204 179 1005 Antisense
TCTCTCTACGTGGCATATCTATCTC 182 613 1030 Antisense
TATTTGGATCTTCTACACCGAGCAG 570 635 1063 Antisense
GCTATTCATCTCGGATCTTGGCATC 105 305 1087 Antisense
GGAAGTATGAGCTCGGCTCCAACGC 31 531 1141 Antisense
GAGAGACTGTTCAAATGCCGGACGG 303 389 1196 Antisense
GGACGGCAGGTGCTATCGAGCCAAA 204 523 1215 Antisense
TCATGTGCTCGTTCGAATTCCTGCT 209 623 1337 Antisense
TTGTGCTCACCAACGACTGGCAACA 416 707 1385 Antisense
ACACATTGTCACCTTCGTGTTGCTC 339 111 1407 Antisense
ATTCTGAGCCGGATCTACGAACCTT 229 9 1480 Antisense
Sequence Source Affymetrix Proprietary Database