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[182249_at]

Description C47D2.1 /REP_DB=WormBase Gene ID /WP=CE06961 /TR=Q22923 /GB=AAB04994.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 60      6grp_total > 17      4grp_total > 12      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2321
1 2 3 4 range
A 860
(-1.6)
P 		697.8
(-2)
P 		323.5
(-3)
P 		2644.8
(3)
P 		2321
B 994.2
(-1.2)
P 		557.2
(-2.4)
P 		341.6
(-3)
P 		2462.4
(3)
P 		2121
C 1124.4
(-0.5)
P 		551.6
(-2.4)
P 		354.1
(-3)
P 		2187
(3)
P 		1833
avr 992.9
(-1.1) 		602.2
(-2.2) 		339.7
(-3) 		2431.4
(3) 		2092

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 596.1
(3)
P 		502.1
(0.9)
P 		427
(-0.7)
P 		324.1
(-3)
P 		339.7
(-2.7)
P 		375.4
(-1.9)
P 		272
B 550.3
(3)
P 		405
(-1.2)
P 		344.9
(-3)
P 		365.8
(-2.4)
P 		343.6
(-3)
P 		385.9
(-1.8)
P 		207
C 638.4
(3)
P 		450.5
(-0.9)
P 		371.3
(-2.5)
P 		346.2
(-3)
P 		348.3
(-3)
P 		379.5
(-2.3)
P 		292
avr 594.9
(3) 		452.5
(-0.4) 		381.1
(-2.1) 		345.4
(-3) 		343.9
(-3) 		380.3
(-2.1) 		251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 446
1 2 3 4 range
A 313.1
(1.5)
P 		151.5
(-1.7)
P 		84.6
(-3)
P 		387.1
(3)
P 		303
B 317
(0.2)
P 		137.6
(-2.2)
P 		79.1
(-3)
P 		524.7
(3)
P 		446
C 372.2
(3)
P 		158.6
(-2.2)
P 		123.4
(-3)
P 		368.8
(2.9)
P 		249
avr 334.1
(1.3) 		149.2
(-2) 		95.7
(-3) 		426.9
(3) 		331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 109.9
(-1.3)
P 		178.6
(3)
P 		93
(-2.3)
P 		82.2
(-3)
P 		102.5
(-1.7)
P 		91.4
(-2.4)
P 		96
B 191.5
(3)
P 		134.8
(-0.2)
P 		83.7
(-3)
P 		96.9
(-2.3)
P 		139.6
(0.1)
P 		143.9
(0.4)
P 		108
C 236.6
(3)
P 		137.5
(-0.6)
P 		94.5
(-2.1)
P 		69.6
(-3)
P 		112.7
(-1.5)
P 		127
(-0.9)
P 		167
avr 179.3
(3) 		150.3
(1.2) 		90.4
(-2.5) 		82.9
(-3) 		118.3
(-0.8) 		120.8
(-0.6) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182249_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16853
Sequence Type Exemplar sequence
Representative Public ID C47D2.1 NCBI
Target Description C47D2.1 /REP_DB=WormBase Gene ID /WP=CE06961 /TR=Q22923 /GB=AAB04994.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076984(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076984 NCBI Caenorhabditis elegans C47D2.1 (C47D2.1) mRNA, complete cds. 11/11 None
SNAP00000002889 ENSEMBL cdna:SNAP chromosome:CEL140:X:8215016:8215465:1 11/11 None
GENEFINDER00000002890 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8215016:8215461:1 11/11 None
C47D2.1 ENSEMBL cdna:known chromosome:CEL140:X:8215016:8215465:1 gene:C47D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8215014-8215464(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47D2.1
Entrez Gene 183545 Entrez gene
SwissProt Q22923 EMBL-EBI
WormBase CE06961 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04994 Hypothetical protein C47D2.1 [Caenorhabditis elegans] ref|NP_509385.1| C47D2.1 [Caenorhabditis elegans] 3.0E-63
blast CAE74857 Hypothetical protein CBG22710 [Caenorhabditis briggsae] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:182249_AT
tgaactcaatcttggctttcgtcgccgttgcatccatcatttttgttaaggccagcgcgc
acatcggagaattcgagcaggtgggattgggagcaacaagcttcaagcctcagttcgatg
tttcaccagtgcaatcccgcgccggcggtctctacgagcaattcagaggcatgcaaaacc
agtacggtagttccccgaagttccagtacactggccgcaatcaaatcctcgaaaagagac
cacagtccccatggcaatcgccactccgcaactgttatctgtctccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACTCAATCTTGGCTTTCGTCGC 275 573 14 Antisense
TTTTTGTTAAGGCCAGCGCGCACAT 527 673 53 Antisense
TCGAGCAGGTGGGATTGGGAGCAAC 470 601 86 Antisense
TGGGAGCAACAAGCTTCAAGCCTCA 400 553 101 Antisense
TCAAGCCTCAGTTCGATGTTTCACC 429 631 116 Antisense
TCGATGTTTCACCAGTGCAATCCCG 85 603 128 Antisense
AGAGGCATGCAAAACCAGTACGGTA 686 65 178 Antisense
TTCCCCGAAGTTCCAGTACACTGGC 59 697 204 Antisense
AGTACACTGGCCGCAATCAAATCCT 372 59 218 Antisense
CGAAAAGAGACCACAGTCCCCATGG 114 251 243 Antisense
CTCCGCAACTGTTATCTGTCTCCGG 272 233 277 Antisense
Sequence Source Affymetrix Proprietary Database