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[182248_at]

Description T12F5.5 /REP_DB=WormBase Gene ID /WP=CE13603 /TR=O44760 /GB=AAB96747.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 68      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 83      6grp_total > 69      4grp_total > 30      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 326
1 2 3 4 range
A 701.7
(3)
P 		571.8
(-2.5)
P 		559.2
(-3)
P 		662.8
(1.4)
P 		143
B 599
(-0.1)
P 		648.9
(1.8)
P 		523.8
(-3)
P 		680.7
(3)
P 		157
C 849.3
(3)
P 		651.3
(-1.8)
P 		635.7
(-2.2)
P 		602.8
(-3)
P 		247
avr 716.7
(3) 		624
(-0.9) 		572.9
(-3) 		648.8
(0.2) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 453
1 2 3 4 5 6 range
A 555.3
(-0.1)
P 		522.3
(-0.6)
P 		405.2
(-2.6)
P 		378.7
(-3)
P 		419.2
(-2.3)
P 		743.4
(3)
P 		365
B 484.7
(0.1)
P 		464.7
(-0.3)
P 		352.4
(-3)
P 		399.5
(-1.9)
P 		418.8
(-1.4)
P 		605.6
(3)
P 		253
C 474.6
(0.6)
P 		441.8
(-0)
P 		431.7
(-0.2)
P 		290.5
(-3)
P 		576.4
(2.6)
P 		597.9
(3)
P 		307
avr 504.9
(0) 		476.3
(-0.5) 		396.4
(-2.2) 		356.2
(-3) 		471.5
(-0.6) 		649
(3) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 255.5
(3)
P 		124.1
(-2)
P 		146.2
(-1.1)
P 		97
(-3)
P 		159
B 191
(3)
P 		160.3
(0.4)
P 		121.4
(-3)
P 		145.1
(-1)
P 		70
C 281.1
(3)
P 		187.3
(-0.1)
P 		221.5
(1)
P 		101.6
(-3)
P 		180
avr 242.5
(3) 		157.2
(-1) 		163
(-0.7) 		114.6
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 102.4
(-2.1)
P 		185.8
(3)
P 		88.2
(-3)
P 		96
(-2.5)
P 		126.5
(-0.6)
P 		181
(2.7)
P 		98
B 168.7
(0.6)
P 		154.7
(-0)
P 		85.6
(-3)
P 		105.8
(-2.1)
P 		170.1
(0.6)
P 		225.8
(3)
P 		140
C 175.9
(2)
P 		134.8
(0.2)
P 		109.9
(-0.8)
P 		58.4
(-3)
P 		186.5
(2.4)
P 		200.1
(3)
P 		142
avr 149
(0.2) 		158.4
(0.7) 		94.6
(-2.6) 		86.7
(-3) 		161
(0.9) 		202.3
(3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182248_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.307
Sequence Type Exemplar sequence
Representative Public ID T12F5.5 NCBI
Target Description T12F5.5 /REP_DB=WormBase Gene ID /WP=CE13603 /TR=O44760 /GB=AAB96747.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058808(11), NM_182024(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058808 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-64) (pqn-64) mRNA, complete cds. 11/11 None
NM_182024 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-64) (pqn-64) mRNA, complete cds. 9/11 None
SNAP00000015203 ENSEMBL cdna:SNAP chromosome:CEL140:I:3733600:3737449:-1 9/11 None
GENEFINDER00000015210 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3733600:3740336:-1 9/11 None
T12F5.5a ENSEMBL cdna:known chromosome:CEL140:I:3732882:3740481:-1 gene:T12F5.5 11/11 None
T12F5.5b ENSEMBL cdna:known chromosome:CEL140:I:3734431:3737482:-1 gene:T12F5.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3733636-3737452(-) 97.84 100.0
Public Domain and Genome References
Ensembl T12F5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68905 Prion-like-(q/n-rich)-domain-bearing protein protein 64, isoform a [Caenorhabditis elegans] ref|NP_491209.3| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-64) [Caenorhabditis elegans] 0.0
blast AAP68906 Prion-like-(q/n-rich)-domain-bearing protein protein 64, isoform b [Caenorhabditis elegans] ref|NP_871824.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-64) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006630 EMBL-EBI RNA-binding protein Lupus Lal 6.6E-32
Pfam IPR006630 EMBL-EBI RNA-binding protein Lupus Lal 6.6E-32
Pfam IPR006630 EMBL-EBI RNA-binding protein Lupus Lal 6.6E-32
Sequence
Target Sequence 
>C. ELEGANS:182248_AT
tcgtccaactgtatcatcatcttcctcatcgagtacgagctccaaatacttttctccgga
tgctgtcgaaactccgactaactctggatcaagtacacctccacaaacatcggttcgcaa
tccgaaatatcatgttcctacaccaacggatcttccaccgcctccagtatggcctgcacc
aaactttgaccggagaagaaaaagttcggaaacatcattcacaacgaacacgacaactaa
tacattgacaccatcgactccagtcactccacccgtaaactgctttcccttcacttccaa
agaaggtggaacctgtgaagccgccacaaaaaccgacgttcaggtagatgatgacgacgt
tgtcatttctatccgacaatcgttattatcgttgtcatgtgatttgtgttgtgattggta
ttgtgccataaaaaagttccgtagctgctggtcggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCCAACTGTATCATCATCTTCC 330 605 1404 Antisense
ATCTTCCTCATCGAGTACGAGCTCC 238 31 1422 Antisense
AAATACTTTTCTCCGGATGCTGTCG 663 115 1447 Antisense
GAAACTCCGACTAACTCTGGATCAA 627 357 1471 Antisense
TCAAGTACACCTCCACAAACATCGG 631 631 1492 Antisense
ATCATGTTCCTACACCAACGGATCT 670 29 1532 Antisense
GTATGGCCTGCACCAAACTTTGACC 159 455 1570 Antisense
TAATACATTGACACCATCGACTCCA 71 633 1641 Antisense
TGCTTTCCCTTCACTTCCAAAGAAG 13 579 1684 Antisense
GACGACGTTGTCATTTCTATCCGAC 679 379 1756 Antisense
AAAGTTCCGTAGCTGCTGGTCGGCT 614 119 1836 Antisense
Sequence Source Affymetrix Proprietary Database