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[182244_at]

Description F21A9.1 /REP_DB=WormBase Gene ID /WP=CE09521 /TR=O01528 /GB=AAB52467.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 7.3
(-0.4)
A 		4.7
(-3)
A 		5.3
(-2.4)
A 		10.7
(3)
A 		6
B 4.4
(-3)
A 		11.3
(3)
A 		5.1
(-2.4)
A 		6
(-1.6)
A 		7
C 37.3
(3)
A 		7.3
(-2.4)
A 		3.7
(-3)
A 		37.4
(3)
A 		34
avr 16.3
(2.2) 		7.8
(-1.6) 		4.7
(-3) 		18
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 11.9
(2.9)
A 		2.9
(-3)
A 		12
(3)
A 		7.5
(0)
A 		6.2
(-0.8)
A 		4.7
(-1.8)
A 		9
B 6.5
(1.1)
A 		8.2
(3)
A 		2.8
(-3)
A 		7.6
(2.3)
A 		7.1
(1.8)
A 		3.2
(-2.6)
A 		5
C 8
(0.7)
A 		4.7
(-1.9)
A 		10.8
(3)
A 		3.4
(-3)
A 		9.9
(2.3)
A 		3.5
(-2.9)
A 		7
avr 8.8
(3) 		5.3
(-1.2) 		8.5
(2.6) 		6.2
(-0.1) 		7.7
(1.7) 		3.8
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.7
(3)
A 		1
(-3)
A 		1.4
(-1.6)
A 		1.6
(-0.9)
A 		2
B 1.4
(-2.3)
A 		2.8
(3)
A 		1.2
(-3)
A 		1.3
(-2.6)
A 		2
C 12.3
(3)
A 		2.1
(-2.6)
A 		1.3
(-3)
A 		6.3
(-0.3)
A 		11
avr 5.5
(3) 		2
(-2) 		1.3
(-3) 		3.1
(-0.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2.2
(1.5)
A 		1
(-3)
A 		2.6
(3)
A 		1.9
(0.4)
A 		1.9
(0.4)
A 		1.1
(-2.6)
A 		2
B 2.3
(1.4)
A 		2.7
(2.5)
A 		0.7
(-3)
A 		2
(0.5)
A 		2.9
(3)
A 		1.2
(-1.6)
A 		2
C 3
(2.5)
A 		1.4
(-1.3)
A 		2.8
(2)
A 		0.7
(-3)
A 		3.2
(3)
A 		1.2
(-1.8)
A 		3
avr 2.5
(2.2) 		1.7
(-1) 		2
(0.2) 		1.5
(-1.8) 		2.7
(3) 		1.2
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182244_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.206
Sequence Type Exemplar sequence
Representative Public ID F21A9.1 NCBI
Target Description F21A9.1 /REP_DB=WormBase Gene ID /WP=CE09521 /TR=O01528 /GB=AAB52467.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058804
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000020225 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3712092:3713115:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058804 5/11 Cross Hyb Matching Probes None
SNAP00000020224 5/11 Cross Hyb Matching Probes None
F21A9.1 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3712130-3713115(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52467 Hypothetical protein F21A9.1 [Caenorhabditis elegans] ref|NP_491205.2| F21A9.1 [Caenorhabditis elegans] 2.0E-44
blast CAE66679 Hypothetical protein CBG12018 [Caenorhabditis briggsae] 3.0E-33
blast CAE66680 Hypothetical protein CBG12019 [Caenorhabditis briggsae] 3.0E-33
Sequence
Target Sequence 
>C. ELEGANS:182244_AT
tttcgttgatcgattccaccacaaatgttactgttatatcggatgcatgcgggaaaatga
cattgctttacgagtttttcaacccgatgacaatgacatatcgattgaaaacttccgcga
gaagtagtgacccgaatgatgattatgaagaggtaaggagaactgtcaccgtgccagtga
attcagaaaattatttccacctttttgtagatcccattttcatagattccccattttgta
gaacgtcttttcgtagatctacttttcgtggaacctcttttcatttaacctctttcgtag
aacctttttcatcactttttgtagatcgtttgcaaaaaacctactttcagatggtaaaac
gagctggctacgtgttccgcgaggagtcatctgctcttcgatgcctcggcgagatccaac
caatcgtcgagttccagaatccagcaaaaccatctgatattcattatgcttcatcgccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGTTGATCGATTCCACCACAAA 144 671 260 Antisense
GAACTGTCACCGTGCCAGTGAATTC 285 349 419 Antisense
ATTTCCACCTTTTTGTAGATCCCAT 308 15 452 Antisense
TCCCATTTTCATAGATTCCCCATTT 485 597 471 Antisense
GTAGATCTACTTTTCGTGGAACCTC 499 455 512 Antisense
TGGAACCTCTTTTCATTTAACCTCT 612 545 528 Antisense
GAACCTTTTTCATCACTTTTTGTAG 108 341 559 Antisense
AAAACGAGCTGGCTACGTGTTCCGC 259 129 615 Antisense
CTTCGATGCCTCGGCGAGATCCAAC 194 219 655 Antisense
GAGATCCAACCAATCGTCGAGTTCC 705 395 670 Antisense
GATATTCATTATGCTTCATCGCCGG 410 427 715 Antisense
Sequence Source Affymetrix Proprietary Database