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[182243_at]

Description F55A3.1 /REP_DB=WormBase Gene ID /WP=CE17111 /TR=Q9N5R7 /GB=AAF39833.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 24      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 80      6grp_total > 03      4grp_total > 30      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 328.1
(1.4)
P 		208.7
(-3)
P 		219.2
(-2.6)
P 		369.7
(3)
P 		161
B 301.2
(3)
P 		281.9
(1)
P 		243.7
(-3)
P 		260.8
(-1.2)
P 		58
C 316.2
(3)
P 		271.8
(-0.8)
P 		247.6
(-2.8)
P 		245.8
(-3)
P 		70
avr 315.2
(3) 		254.1
(-1.7) 		236.8
(-3) 		292.1
(1.2) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 252.7
(-0.3)
P 		317.6
(3)
P 		244.8
(-0.7)
P 		284.8
(1.3)
P 		210.4
(-2.5)
P 		200.5
(-3)
P 		117
B 236.6
(2.9)
P 		237.6
(3)
P 		154.2
(-3)
P 		173.7
(-1.6)
P 		183.6
(-0.9)
P 		159.5
(-2.6)
P 		83
C 295.1
(3)
P 		276.6
(2.3)
P 		162.5
(-2)
P 		270.8
(2.1)
P 		152.7
(-2.3)
P 		135
(-3)
P 		160
avr 261.5
(2.2) 		277.3
(3) 		187.2
(-1.8) 		243.1
(1.2) 		182.2
(-2.1) 		165
(-3) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 119.4
(3)
P 		45.3
(-3)
P 		57.3
(-2)
P 		54.1
(-2.3)
P 		74
B 96
(3)
P 		69.6
(-0.9)
P 		56.5
(-2.9)
P 		55.6
(-3)
P 		40
C 104.7
(3)
P 		78.1
(0.5)
P 		86.3
(1.3)
P 		41.4
(-3)
P 		63
avr 106.7
(3) 		64.3
(-1.5) 		66.7
(-1.3) 		50.4
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 46.6
(-3)
P 		112.9
(3)
P 		53.3
(-2.4)
P 		72.2
(-0.7)
P 		63.5
(-1.5)
P 		48.8
(-2.8)
P 		66
B 82.3
(3)
P 		79.1
(2.6)
P 		37.4
(-3)
P 		46
(-1.9)
P 		74.6
(2)
P 		59.5
(-0)
P 		45
C 109.4
(3)
P 		84.4
(0.8)
P 		41.4
(-3)
P 		54.5
(-1.8)
P 		49.4
(-2.3)
P 		45.2
(-2.7)
P 		68
avr 79.4
(1.4) 		92.1
(3) 		44
(-3) 		57.6
(-1.3) 		62.5
(-0.7) 		51.2
(-2.1) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182243_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1020
Sequence Type Exemplar sequence
Representative Public ID F55A3.1 NCBI
Target Description F55A3.1 /REP_DB=WormBase Gene ID /WP=CE17111 /TR=Q9N5R7 /GB=AAF39833.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060422(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060422 NCBI Caenorhabditis elegans F55A3.1 (F55A3.1) mRNA, complete cds. 10/11 None
GENEFINDER00000013388 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10811807:10814504:1 10/11 None
F55A3.1 ENSEMBL cdna:known chromosome:CEL140:I:10807744:10815022:1 gene:F55A3.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013366 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10807688-10813675(+) 96.66 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A3.1
Entrez Gene 172986 Entrez gene
WormBase CE37022 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:11987_AT zinc finger (C3HC4-type RING finger) family protein at
ATH1-121501:253267_AT zinc finger (C3HC4-type RING finger) family protein at
CANINE:1584691_AT similar to membrane-associated ring finger (C3HC4) 6 cfa
CANINE_2:CFA.18867.1.S1_S_AT similar to membrane-associated ring finger (C3HC4) 6 cfa
CANINE_2:CFAAFFX.15767.1.S1_S_AT similar to membrane-associated ring finger (C3HC4) 6 cfa
DROSOPHILA_2:1623889_AT dm
DROSGENOME1:153090_AT dm
HG-U133_PLUS_2:215512_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133A_2:215512_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133A:215512_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133A_2:201737_S_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133A:201737_S_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133_PLUS_2:201737_S_AT membrane-associated ring finger (C3HC4) 6 hs
HG-FOCUS:201737_S_AT membrane-associated ring finger (C3HC4) 6 hs
HU35KSUBA:RC_AA424961_S_AT membrane-associated ring finger (C3HC4) 6 hs
HU35KSUBB:RC_AA054516_S_AT membrane-associated ring finger (C3HC4) 6 hs
HU35KSUBB:RC_N70344_S_AT membrane-associated ring finger (C3HC4) 6 hs
HUGENEFL:AF009301_AT membrane-associated ring finger (C3HC4) 6 hs
U133_X3P:G5032166_3P_A_AT membrane-associated ring finger (C3HC4) 6 hs
U133_X3P:HS.20141.1.A1_3P_AT membrane-associated ring finger (C3HC4) 6 hs
U133_X3P:HS.20141.0.A1_3P_A_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133A_2:201736_S_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133_PLUS_2:201736_S_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133A:201736_S_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U95AV2:32802_AT membrane-associated ring finger (C3HC4) 6 hs
HG-U133_PLUS_2:215902_AT Membrane-associated ring finger (C3HC4) 6 hs
HG-U133A_2:215902_AT Membrane-associated ring finger (C3HC4) 6 hs
HG-U133A:215902_AT Membrane-associated ring finger (C3HC4) 6 hs
HU35KSUBD:RC_H78349_AT Membrane-associated ring finger (C3HC4) 6 hs
U133_X3P:HS.102238.0.A1_3P_AT Membrane-associated ring finger (C3HC4) 6 hs
MOUSE430_2:1445928_AT membrane-associated ring finger (C3HC4) 6 mm
MOE430B:1445928_AT membrane-associated ring finger (C3HC4) 6 mm
MU11KSUBA:AA169049_S_AT membrane-associated ring finger (C3HC4) 6 mm
MG-U74AV2:104621_AT membrane-associated ring finger (C3HC4) 6 mm
MG-U74CV2:129184_AT membrane-associated ring finger (C3HC4) 6 mm
MG-U74CV2:168375_AT membrane-associated ring finger (C3HC4) 6 mm
MOE430A:1433834_AT membrane-associated ring finger (C3HC4) 6 mm
MOUSE430A_2:1433834_AT membrane-associated ring finger (C3HC4) 6 mm
MOUSE430_2:1433834_AT membrane-associated ring finger (C3HC4) 6 mm
MG-U74CV2:139168_AT Membrane-associated ring finger (C3HC4) 6, mRNA (cDNA clone IMAGE:4022487) mm
MOE430B:1444903_AT Membrane-associated ring finger (C3HC4) 6, mRNA (cDNA clone IMAGE:4022487) mm
MOUSE430_2:1444903_AT Membrane-associated ring finger (C3HC4) 6, mRNA (cDNA clone IMAGE:4022487) mm
MOE430B:1457154_AT Membrane-associated ring finger (C3HC4) 6, mRNA (cDNA clone IMAGE:4022487) mm
MOUSE430_2:1457154_AT Membrane-associated ring finger (C3HC4) 6, mRNA (cDNA clone IMAGE:4022487) mm
RG-U34A:RC_AA874856_AT similar to KIAA0597 protein rn
RAE230A:1393593_AT similar to KIAA0597 protein rn
RAT230_2:1393593_AT similar to KIAA0597 protein rn
RG-U34B:RC_AA850978_AT Similar to KIAA0597 protein rn
RAE230A:1372395_AT Similar to KIAA0597 protein rn
RAT230_2:1372395_AT Similar to KIAA0597 protein rn
RAE230B:1394618_AT Similar to KIAA0597 protein rn
RAT230_2:1394618_AT Similar to KIAA0597 protein rn
RG-U34A:RC_H33075_AT Similar to KIAA0597 protein rn
Protein Similarities
Method ID Description E-Value
blast NP_492823 F55A3.1 [Caenorhabditis elegans] 0.0
blast AAZ91358 Hypothetical protein F55A3.1 [Caenorhabditis elegans] 0.0
blast CAE66833 Hypothetical protein CBG12203 [Caenorhabditis briggsae] 0.0
blast NP_492823 F55A3.1 [Caenorhabditis elegans] 1.0E-164
blast AAZ91358 Hypothetical protein F55A3.1 [Caenorhabditis elegans] 1.0E-125
blast CAE66833 Hypothetical protein CBG12203 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.3E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492823.2 12 134-156,187-204,419-441,456-478,491-513,547-569,607-629,756-778,844-866,886-908,929-951,966-988
F55A3.1 12 134-156,187-204,419-441,456-478,491-513,547-569,607-629,756-778,844-866,886-908,929-951,966-988
GENEFINDER00000013388 6 96-118,138-160,225-247,267-289,310-332,347-369
Sequence
Target Sequence 
>C. ELEGANS:182243_AT
gagaggaggaccacacttgttcaagagagctgttgttcattattcttacttgggaatgcg
cctgtttcttgttgcaattccaataattatcgtcttgccacttttgatgggtacttattt
ccaattggttttcttcactccaatgcgattgggatatcaacagacagcactaatgttccc
atatcaagactgggcaatgggcgttgttcaaatcaaaatcttcggtgtaattgctgtaat
gggacccgattggtggctgaaaacagaactcgatctacttgtgcaacgtggaattgagaa
ttttgcggcgttacacgttttcgtgaggattgtcgtcccatgtatactgtatctatcgac
ttttatcgcttttccggttgttgtgatcaagttttacgcgtttatttcaggtaaaatgga
ttctagaaggatttcagaattaattggatcctttaaattgaaaaaatctcaaaaatggcc
atgtgttgatttacgcagctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGGAGGACCACACTTGTTCAAG 239 395 2478 Antisense
GAGCTGTTGTTCATTATTCTTACTT 562 387 2504 Antisense
AATGCGCCTGTTTCTTGTTGCAATT 384 167 2532 Antisense
ATAATTATCGTCTTGCCACTTTTGA 292 25 2560 Antisense
TGGTTTTCTTCACTCCAATGCGATT 524 549 2603 Antisense
GACAGCACTAATGTTCCCATATCAA 36 369 2640 Antisense
ACTCGATCTACTTGTGCAACGTGGA 441 97 2745 Antisense
TTTGCGGCGTTACACGTTTTCGTGA 611 665 2779 Antisense
GATTGTCGTCCCATGTATACTGTAT 486 435 2805 Antisense
TATCGCTTTTCCGGTTGTTGTGATC 305 659 2841 Antisense
GGCCATGTGTTGATTTACGCAGCTC 38 545 2954 Antisense
Sequence Source Affymetrix Proprietary Database