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[182242_at]

Description T23G11.4 /REP_DB=WormBase Gene ID /WP=CE14098 /TR=Q9XVH9 /GB=CAB03415.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      6grp_highest_nonorm > 72      6grp_total > 64      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 593
1 2 3 4 range
A 373
(-1.8)
M 		352.1
(-2)
A 		257.2
(-3)
M 		850.3
(3)
P 		593
B 322
(-3)
M 		369.1
(-2.4)
A 		372
(-2.4)
M 		799
(3)
P 		477
C 407.3
(-1.6)
P 		379.4
(-1.9)
A 		278.6
(-3)
P 		845.6
(3)
P 		567
avr 367.4
(-2.3) 		366.9
(-2.3) 		302.6
(-3) 		831.6
(3) 		529

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 378
1 2 3 4 5 6 range
A 326.3
(-3)
P 		328.6
(-3)
P 		629.9
(3)
P 		453.5
(-0.5)
P 		378.1
(-2)
P 		457.8
(-0.4)
P 		304
B 425
(-2.9)
P 		442.8
(-2.5)
P 		697.2
(3)
P 		519.2
(-0.9)
P 		421.1
(-3)
P 		562.8
(0.1)
P 		276
C 319.2
(-3)
P 		379.7
(-1.9)
P 		324.2
(-2.9)
P 		522.8
(0.8)
P 		364.1
(-2.2)
P 		642.8
(3)
P 		324
avr 356.8
(-3) 		383.7
(-2.2) 		550.4
(2.9) 		498.5
(1.3) 		387.8
(-2.1) 		554.5
(3) 		198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 135.8
(3)
M 		76.4
(-2.2)
A 		67.2
(-3)
M 		124.5
(2)
P 		69
B 102.7
(-1.8)
M 		91.2
(-2.6)
A 		86.2
(-3)
M 		170.3
(3)
P 		84
C 134.8
(2)
P 		109.1
(-1.4)
A 		97.1
(-3)
P 		142.6
(3)
P 		46
avr 124.4
(0.9) 		92.2
(-2.2) 		83.5
(-3) 		145.8
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 60.2
(-3)
P 		116.9
(1.4)
P 		137.2
(3)
P 		115
(1.3)
P 		114.1
(1.2)
P 		111.5
(1)
P 		77
B 147.9
(-2.1)
P 		147.4
(-2.2)
P 		169.3
(-0.4)
P 		137.5
(-3)
P 		171.1
(-0.2)
P 		209.9
(3)
P 		72
C 118.3
(-1.4)
P 		115.9
(-1.5)
P 		82.5
(-3)
P 		105.1
(-2)
P 		117.8
(-1.4)
P 		215.2
(3)
P 		133
avr 108.8
(-3) 		126.7
(-1.5) 		129.7
(-1.2) 		119.2
(-2.1) 		134.3
(-0.8) 		178.9
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.777
Sequence Type Exemplar sequence
Representative Public ID T23G11.4 NCBI
Target Description T23G11.4 /REP_DB=WormBase Gene ID /WP=CE14098 /TR=Q9XVH9 /GB=CAB03415.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059741 NCBI Caenorhabditis elegans T23G11.4 (T23G11.4) mRNA, complete cds. 11/11 None
SNAP00000027649 ENSEMBL cdna:SNAP chromosome:CEL140:I:7702469:7703295:1 11/11 None
GENEFINDER00000027659 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7702469:7703295:1 11/11 None
T23G11.4 ENSEMBL cdna:known chromosome:CEL140:I:7702469:7703347:1 gene:T23G11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7702399-7703226(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23G11.4
Entrez Gene 172531 Entrez gene
SwissProt Q9XVH9 EMBL-EBI
WormBase CE14098 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03415 Hypothetical protein T23G11.4 [Caenorhabditis elegans] ref|NP_492142.1| T23G11.4 [Caenorhabditis elegans] 1.0E-122
blast CAE57360 Hypothetical protein CBG00304 [Caenorhabditis briggsae] 1.0E-95
blast NP_659134 cDNA sequence BC005624 [Mus musculus] gb|AAH05624.1| CDNA sequence BC005624 [Mus musculus] dbj|BAE34621.1| unnamed protein product [Mus musculus] dbj|BAE40080.1| unnamed protein product [Mus musculus] 4.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR010756 EMBL-EBI Hepatocellular carcinoma-associated antigen 59 2.6E-69
Sequence
Target Sequence 
>C. ELEGANS:182242_AT
gtttccgatattcgagatcttcaacgatcacgagaaaggaaaaatggtctcacagaatta
gaatgcgcagttggaatttcaaaagctgcagctctcgaggatggaattcaaatggctggt
ggcggaatggtgatgacaagtaaaaagaaggcagcaatggaagctgcaagcattgaacaa
ggactccgagaacaattcgagaaggaaacaatgctgagagatgaacatgaagaattaagg
aaatatattgatgacggacttcaagaatatacagctgatacttctaaaattgaaaaacag
aaacaaccttcttcatcagctgcagctaaattttcatcgctgaatgcagaagatcgtgat
gtagagcttttgaaacaagctgctggaaaagtgaagggaaatcaaagcaaaaaggagaca
gaattgctttcagagcatatgctcgcaggaatcccagaagtggacctgggaattagcact
cgtatcaccaatatcttggagactgaaaagaaaaaacgattccttcttcaaatatctgct
gctgaagctgcaggtcttccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCCGATATTCGAGATCTTCAAC 373 451 106 Antisense
GCTGCAGCTCTCGAGGATGGAATTC 248 297 190 Antisense
GGCTGGTGGCGGAATGGTGATGACA 189 541 219 Antisense
GCAAGCATTGAACAAGGACTCCGAG 156 321 271 Antisense
CAGAAACAACCTTCTTCATCAGCTG 432 205 403 Antisense
TCAGCTGCAGCTAAATTTTCATCGC 60 625 421 Antisense
GAGCATATGCTCGCAGGAATCCCAG 411 389 538 Antisense
GGACCTGGGAATTAGCACTCGTATC 267 523 567 Antisense
TAGCACTCGTATCACCAATATCTTG 137 651 579 Antisense
ATTCCTTCTTCAAATATCTGCTGCT 542 7 624 Antisense
GCTGCTGAAGCTGCAGGTCTTCCAC 87 297 643 Antisense
Sequence Source Affymetrix Proprietary Database