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[182241_s_at]

Description C04A11.2 /REP_DB=WormBase Gene ID /WP=CE07904 /TR=O17568 /GB=CAB03831.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 55.3
(3)
A 		40.2
(1.1)
A 		19
(-1.5)
A 		6.4
(-3)
A 		49
B 9.1
(2.7)
A 		3.8
(-1.4)
A 		9.5
(3)
A 		1.8
(-3)
A 		8
C 5.8
(-3)
A 		10
(-1.4)
A 		9.3
(-1.6)
A 		21.1
(3)
A 		15
avr 23.4
(3) 		18
(0.6) 		12.6
(-1.8) 		9.8
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 16.8
(-1.9)
A 		47.1
(3)
A 		18.9
(-1.5)
A 		23
(-0.9)
A 		9.7
(-3)
A 		33.6
(0.8)
A 		37
B 6.9
(-3)
A 		18.7
(-1.4)
A 		11.4
(-2.4)
A 		52.2
(3)
A 		13.3
(-2.2)
A 		44.8
(2)
P 		45
C 50.9
(1.7)
A 		5.7
(-3)
A 		62.8
(3)
A 		45.5
(1.2)
A 		42
(0.8)
P 		44
(1)
A 		57
avr 24.9
(-2) 		23.8
(-2.3) 		31
(-0.1) 		40.2
(2.8) 		21.7
(-3) 		40.8
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.1
(3)
A 		8.7
(-0.6)
A 		5
(-1.7)
A 		0.9
(-3)
A 		19
B 2.9
(3)
A 		0.9
(-1.8)
A 		2.2
(1.3)
A 		0.4
(-3)
A 		3
C 1.9
(-3)
A 		2.9
(0.5)
A 		3.2
(1.6)
A 		3.6
(3)
A 		2
avr 8.3
(3) 		4.2
(-0.7) 		3.5
(-1.3) 		1.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3.1
(-2.9)
A 		16.7
(3)
A 		4.1
(-2.5)
A 		5.8
(-1.7)
A 		2.9
(-3)
A 		8.2
(-0.7)
A 		14
B 2.4
(-3)
A 		6.2
(-1.4)
A 		2.8
(-2.8)
A 		13.8
(1.8)
A 		5.4
(-1.7)
A 		16.7
(3)
P 		14
C 18.9
(3)
A 		1.7
(-3)
A 		16
(2)
A 		9.2
(-0.4)
A 		13.6
(1.2)
P 		14.7
(1.5)
A 		17
avr 8.1
(-2.2) 		8.2
(-2.1) 		7.6
(-2.7) 		9.6
(-0.7) 		7.3
(-3) 		13.2
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182241_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17419
Sequence Type Exemplar sequence
Representative Public ID C04A11.2 NCBI
Target Description C04A11.2 /REP_DB=WormBase Gene ID /WP=CE07904 /TR=O17568 /GB=CAB03831.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077888(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077888 NCBI Caenorhabditis elegans C04A11.2 (C04A11.2) mRNA, complete cds. 11/11 None
SNAP00000007389 ENSEMBL cdna:SNAP chromosome:CEL140:X:13666033:13668617:-1 11/11 None
GENEFINDER00000007396 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13666033:13668617:-1 11/11 None
C04A11.2 ENSEMBL cdna:known chromosome:CEL140:X:13665888:13668731:-1 gene:C04A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13666032-13668617(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04A11.2
Entrez Gene 181487 Entrez gene
SwissProt O17568 EMBL-EBI
WormBase CE07904 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03831 Hypothetical protein C04A11.2 [Caenorhabditis elegans] ref|NP_510289.1| C04A11.2 [Caenorhabditis elegans] 0.0
blast CAE63099 Hypothetical protein CBG07390 [Caenorhabditis briggsae] 1.0E-131
blast CAE63099 Hypothetical protein CBG07390 [Caenorhabditis briggsae] 1.0E-127
Sequence
Target Sequence 
>C. ELEGANS:182241_S_AT
ctgagccgattggaactcgttcgcgtccagcaagataccaatcacaaacacttccaagac
aattaacagctaacaattctagaagatcacagtctagacgaaggctatttgtggatgaag
aaagtaataatgaagatcgtaatgaggagcagcctgaagttaaccaataccaccgcacac
gcagtgaagcagcaatcgagcatctcaacatttccccaatgaaggatgatcagtgggctc
gagcgtgcccgccacgaattcatctcgaacgaaatcgcccagaattcatcgaacgcgtcg
aagcccggcaaagcattattcgagctgcgtctgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGAGCCGATTGGAACTCGTTCGCG 109 223 707 Antisense
GTTCGCGTCCAGCAAGATACCAATC 436 441 725 Antisense
AGATACCAATCACAAACACTTCCAA 152 67 739 Antisense
CACCGCACACGCAGTGAAGCAGCAA 354 201 877 Antisense
CAATCGAGCATCTCAACATTTCCCC 83 183 899 Antisense
GATGATCAGTGGGCTCGAGCGTGCC 328 409 931 Antisense
CCGCCACGAATTCATCTCGAACGAA 84 261 955 Antisense
GAACGAAATCGCCCAGAATTCATCG 503 347 973 Antisense
GAATTCATCGAACGCGTCGAAGCCC 399 323 988 Antisense
GAAGCCCGGCAAAGCATTATTCGAG 71 345 1006 Antisense
GCATTATTCGAGCTGCGTCTGAGAA 68 309 1019 Antisense
Sequence Source Affymetrix Proprietary Database