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[182240_at]

Description Y80D3A.9 /REP_DB=WormBase Gene ID /WP=CE24678 /TR=Q9U1Q8 /GB=CAB60443.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 39      6grp_highest_nonorm > 81      6grp_total > 18      4grp_total > 40      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 163.8
(-0)
M 		111.2
(-3)
A 		216.9
(3)
P 		177.1
(0.7)
P 		106
B 138.1
(-1.1)
A 		119.7
(-3)
A 		179.3
(3)
P 		136.2
(-1.3)
A 		60
C 127.4
(-3)
A 		147.7
(-1.3)
A 		198.3
(3)
P 		168.5
(0.5)
A 		71
avr 143.1
(-1.6) 		126.2
(-3) 		198.2
(3) 		160.6
(-0.1) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 459.3
(3)
P 		184.1
(-3)
P 		238.8
(-1.8)
P 		182.7
(-3)
P 		211.3
(-2.4)
P 		285.8
(-0.8)
P 		277
B 366.9
(3)
P 		149.6
(-3)
P 		191.4
(-1.8)
P 		203.4
(-1.5)
P 		289.4
(0.9)
P 		251.9
(-0.2)
P 		217
C 406.4
(3)
P 		205.1
(-2.3)
P 		185.9
(-2.8)
P 		180.2
(-3)
P 		235.3
(-1.5)
P 		261.2
(-0.9)
P 		226
avr 410.9
(3) 		179.6
(-3) 		205.4
(-2.3) 		188.8
(-2.8) 		245.3
(-1.3) 		266.3
(-0.8) 		231
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 59.6
(3)
M 		24.1
(-3)
A 		56.7
(2.5)
P 		25.9
(-2.7)
P 		36
B 44
(3)
A 		29.6
(-2.8)
A 		41.5
(2)
P 		29
(-3)
A 		15
C 42.2
(-1)
A 		42.5
(-0.9)
A 		69.1
(3)
P 		28.4
(-3)
A 		41
avr 48.6
(1.5) 		32.1
(-2.1) 		55.8
(3) 		27.8
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 84.7
(3)
P 		65.5
(0)
P 		52
(-2.1)
P 		46.3
(-3)
P 		63.8
(-0.3)
P 		69.6
(0.6)
P 		38
B 127.7
(3)
P 		49.8
(-2.8)
P 		46.5
(-3)
P 		53.9
(-2.5)
P 		117.6
(2.3)
P 		93.9
(0.5)
P 		81
C 150.6
(3)
P 		62.6
(-1.6)
P 		47.3
(-2.4)
P 		36.2
(-3)
P 		76.1
(-0.9)
P 		87.4
(-0.3)
P 		114
avr 121
(3) 		59.3
(-1.9) 		48.6
(-2.8) 		45.5
(-3) 		85.8
(0.2) 		83.6
(0) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182240_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14594
Sequence Type Exemplar sequence
Representative Public ID Y80D3A.9 NCBI
Target Description Y80D3A.9 /REP_DB=WormBase Gene ID /WP=CE24678 /TR=Q9U1Q8 /GB=CAB60443.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075291 NCBI Caenorhabditis elegans Y80D3A.9 (Y80D3A.9) mRNA, complete cds. 11/11 None
GENEFINDER00000017377 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18955587:18959032:-1 11/11 None
Y80D3A.9 ENSEMBL cdna:known chromosome:CEL140:V:18955719:18959879:-1 gene:Y80D3A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18955718-18959879(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y80D3A.9
Entrez Gene 190742 Entrez gene
SwissProt Q9U1Q8 EMBL-EBI
WormBase CE24678 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60443 Hypothetical protein Y80D3A.9 [Caenorhabditis elegans] ref|NP_507692.1| Y80D3A.9 [Caenorhabditis elegans] 1.0E-163
blast CAE56194 Hypothetical protein CBG23817 [Caenorhabditis briggsae] 1.0E-120
blast CAB60443 Hypothetical protein Y80D3A.9 [Caenorhabditis elegans] ref|NP_507692.1| Y80D3A.9 [Caenorhabditis elegans] 1.0E-111
blast CAB01439 Hypothetical protein R186.1 [Caenorhabditis elegans] ref|NP_506243.1| R186.1 [Caenorhabditis elegans] 2.0E-80
blast CAE56194 Hypothetical protein CBG23817 [Caenorhabditis briggsae] 2.0E-75
blast CAB01439 Hypothetical protein R186.1 [Caenorhabditis elegans] ref|NP_506243.1| R186.1 [Caenorhabditis elegans] 3.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR008551 EMBL-EBI Protein of unknown function DUF833 1.0E-126
Pfam IPR008551 EMBL-EBI Protein of unknown function DUF833 4.4E-95
Sequence
Target Sequence 
>C. ELEGANS:182240_AT
aaaatcccacaactggactcttccacgttcaatcactgaccaatcagctggtagatcaaa
ttgaaatttcgaaatggaatgataaattccacgtgttctccaacagcccgccgcacgttc
cgttcaaaaaaaccgaattcggactgaaaatgttcgaggaaaagctgaaaaacactgatg
agatgtctgtggagcagattttcgaaaaacttttcgaaattgcaacgtgtcggacaagct
gcttcccggatgaccaaattcgtgctcaaacaggcttcccggagcacatttacaagccgt
taacgtcgatttttgtgcgatttcccgaaattcggagatacggtacccgctcccataccc
taatagtggtggaccaaaacggccaggttactgtactggatagacgcatggagcctgcgg
agagcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATCCCACAACTGGACTCTTCCA 122 133 377 Antisense
TCTTCCACGTTCAATCACTGACCAA 569 617 395 Antisense
TGATAAATTCCACGTGTTCTCCAAC 414 565 456 Antisense
GCTTCCCGGATGACCAAATTCGTGC 433 305 617 Antisense
AAATTCGTGCTCAAACAGGCTTCCC 520 115 632 Antisense
GGCTTCCCGGAGCACATTTACAAGC 367 535 649 Antisense
TCGATTTTTGTGCGATTTCCCGAAA 180 603 682 Antisense
GAAATTCGGAGATACGGTACCCGCT 28 315 703 Antisense
CGCTCCCATACCCTAATAGTGGTGG 484 255 724 Antisense
GTGGACCAAAACGGCCAGGTTACTG 335 463 745 Antisense
GACGCATGGAGCCTGCGGAGAGCGT 220 379 779 Antisense
Sequence Source Affymetrix Proprietary Database