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[182239_at]

Description K02F6.6 /REP_DB=WormBase Gene ID /WP=CE11666 /TR=O16629 /GB=AAB66100.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 9.9
(-3)
A 		39.4
(-0.8)
A 		12.6
(-2.8)
A 		89.6
(3)
A 		80
B 54.8
(3)
A 		42.8
(-2.4)
A 		48.8
(0.3)
A 		41.5
(-3)
A 		13
C 12.9
(-3)
A 		71
(3)
A 		35.5
(-0.7)
A 		34
(-0.8)
A 		58
avr 25.9
(-3) 		51.1
(2.2) 		32.3
(-1.7) 		55
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 31.9
(-1.5)
A 		24.3
(-3)
A 		53.4
(2.6)
A 		55.3
(3)
A 		45.7
(1.1)
A 		42.3
(0.5)
A 		31
B 37.3
(-0.4)
A 		39.8
(-0.2)
A 		10.4
(-3)
A 		72.3
(3)
A 		22.3
(-1.8)
A 		33.7
(-0.7)
A 		62
C 7.6
(-3)
A 		52.8
(0.7)
A 		81.5
(3)
A 		14.4
(-2.4)
A 		60.4
(1.3)
A 		27.9
(-1.4)
A 		74
avr 25.6
(-3) 		39
(0.5) 		48.4
(3) 		47.3
(2.7) 		42.8
(1.5) 		34.6
(-0.6) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.6
(-2.8)
A 		8.5
(0.2)
A 		3.3
(-3)
A 		13.1
(3)
A 		10
B 17.5
(3)
A 		10.6
(-1.8)
A 		11.3
(-1.3)
A 		8.8
(-3)
A 		9
C 4.3
(-3)
A 		20.4
(3)
A 		12.4
(0)
A 		5.7
(-2.5)
A 		16
avr 8.5
(-3) 		13.2
(3) 		9
(-2.4) 		9.2
(-2.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5.9
(-3)
A 		8.6
(-1)
A 		11.6
(1.2)
A 		14
(3)
A 		13.8
(2.9)
A 		10.3
(0.3)
A 		8
B 13
(0.8)
A 		13.3
(0.9)
A 		2.5
(-3)
A 		19.2
(3)
A 		9.1
(-0.6)
A 		12.6
(0.6)
A 		17
C 2.8
(-3)
A 		16.1
(1.5)
A 		20.7
(3)
A 		2.9
(-3)
A 		19.5
(2.6)
A 		9.3
(-0.8)
A 		18
avr 7.2
(-3) 		12.7
(1.8) 		11.6
(0.8) 		12
(1.2) 		14.1
(3) 		10.7
(0) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182239_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4325
Sequence Type Exemplar sequence
Representative Public ID K02F6.6 NCBI
Target Description K02F6.6 /REP_DB=WormBase Gene ID /WP=CE11666 /TR=O16629 /GB=AAB66100.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061889 NCBI Caenorhabditis elegans K02F6.6 (K02F6.6) mRNA, complete cds. 11/11 None
GENEFINDER00000019505 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2529942:2531477:1 9/11 None
K02F6.6 ENSEMBL cdna:known chromosome:CEL140:II:2529293:2531477:1 gene:K02F6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019488 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2529291-2531476(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02F6.6
Entrez Gene 186909 Entrez gene
SwissProt O16629 EMBL-EBI
WormBase CE11666 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66100 Hypothetical protein K02F6.6 [Caenorhabditis elegans] ref|NP_494290.1| K02F6.6 [Caenorhabditis elegans] 1.0E-99
blast AAB66100 Hypothetical protein K02F6.6 [Caenorhabditis elegans] ref|NP_494290.1| K02F6.6 [Caenorhabditis elegans] 3.0E-82
blast AAC68765 Hypothetical protein C40A11.3 [Caenorhabditis elegans] ref|NP_494196.1| C40A11.3 [Caenorhabditis elegans] 2.0E-25
blast T31922 hypothetical protein C17F4.4 - Caenorhabditis elegans 2.0E-15
blast AAK72056 Hypothetical protein C17F4.8 [Caenorhabditis elegans] ref|NP_494485.2| C17F4.8 [Caenorhabditis elegans] 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.1E-14
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.1E-14
Sequence
Target Sequence 
>C. ELEGANS:182239_AT
gatcgaaaactcccagttgtatcgaaaacaaacagaaaaatgcaaaaaatcgcggcgaac
tgatgtgctccaaaccgacgcatctaattgcattttcatcgaccgctccccaaaacattt
cgacttaatcctgaacttcctgagagacggtgacgtggatcttcctgaacaaggaaaaga
gctcaaggaaccccgtcttttgatcgaatatggaaagatattggatttggtggaatacca
aagattgggtttcaatgtgtcggatatcatggaaagatatggaaatcaattgcacattgc
ttttcaaaaaaatagcgacccagaagagtgtaaatcaactcttcaattcaaaactaacat
aagagccatcagtcagagatatgacagctggcaatattcaaatgcgaataaacaattcac
aaaattcgtcgacgattccctcgcttttattgctgatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGAAAACTCCCAGTTGTATCGA 329 413 36 Antisense
AAATCGCGGCGAACTGATGTGCTCC 136 119 82 Antisense
GCTCCAAACCGACGCATCTAATTGC 426 297 102 Antisense
ATCTAATTGCATTTTCATCGACCGC 197 33 117 Antisense
GCTCCCCAAAACATTTCGACTTAAT 222 283 140 Antisense
TCGACTTAATCCTGAACTTCCTGAG 195 599 155 Antisense
GGAACCCCGTCTTTTGATCGAATAT 422 529 222 Antisense
TTGGGTTTCAATGTGTCGGATATCA 616 707 280 Antisense
CTAACATAAGAGCCATCAGTCAGAG 34 225 389 Antisense
CAAAATTCGTCGACGATTCCCTCGC 694 189 455 Antisense
ATTCCCTCGCTTTTATTGCTGATTA 404 9 470 Antisense
Sequence Source Affymetrix Proprietary Database