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[182237_at]

Description F23D12.2 /REP_DB=WormBase Gene ID /WP=CE05700 /TR=Q19761 /GB=CAA94618.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 45
(1.9)
A 		10.1
(-3)
A 		53.2
(3)
A 		41.4
(1.4)
A 		43
B 61
(3)
A 		11.8
(-3)
A 		48.4
(1.5)
A 		31.1
(-0.6)
A 		49
C 48.4
(1.3)
A 		16.2
(-3)
A 		50.5
(1.6)
A 		61.2
(3)
A 		45
avr 51.5
(3) 		12.7
(-3) 		50.7
(2.9) 		44.6
(1.9) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 38.5
(-3)
A 		78.2
(2.4)
P 		82.8
(3)
M 		56.7
(-0.5)
P 		63.5
(0.4)
A 		76.7
(2.2)
A 		44
B 71.6
(0.9)
A 		81.8
(3)
P 		52.5
(-3)
A 		61.6
(-1.1)
A 		58.4
(-1.8)
P 		57.9
(-1.9)
P 		29
C 31.2
(-3)
A 		66.9
(3)
A 		51.2
(0.4)
A 		54.5
(0.9)
A 		50.1
(0.2)
A 		48.9
(-0)
A 		36
avr 47.1
(-3) 		75.6
(3) 		62.2
(0.2) 		57.6
(-0.8) 		57.3
(-0.9) 		61.2
(-0) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 16.4
(3)
A 		2.2
(-3)
A 		13.9
(1.9)
A 		6.1
(-1.4)
A 		14
B 19.5
(3)
A 		2.9
(-3)
A 		11.2
(-0)
A 		6.6
(-1.7)
A 		17
C 16
(2.3)
A 		4.7
(-3)
A 		17.6
(3)
A 		10.3
(-0.4)
A 		13
avr 17.3
(3) 		3.3
(-3) 		14.2
(1.7) 		7.7
(-1.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 7.1
(-3)
A 		27.8
(3)
P 		18
(0.2)
M 		14.4
(-0.9)
P 		19.2
(0.5)
A 		18.7
(0.4)
A 		21
B 24.9
(2)
A 		27.2
(3)
P 		12.8
(-3)
A 		16.3
(-1.5)
A 		23.7
(1.5)
P 		21.6
(0.7)
P 		14
C 11.6
(-2.6)
A 		20.4
(3)
A 		13
(-1.7)
A 		11
(-3)
A 		16.2
(0.3)
A 		16.4
(0.4)
A 		9
avr 14.5
(-2.7) 		25.1
(3) 		14.6
(-2.6) 		13.9
(-3) 		19.7
(0.1) 		18.9
(-0.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182237_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17407
Sequence Type Exemplar sequence
Representative Public ID F23D12.2 NCBI
Target Description F23D12.2 /REP_DB=WormBase Gene ID /WP=CE05700 /TR=Q19761 /GB=CAA94618.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078000(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078000 NCBI Caenorhabditis elegans F23D12.2 (F23D12.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000029574 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14411337:14412774:-1 11/11 None
SNAP00000029573 ENSEMBL cdna:SNAP chromosome:CEL140:X:14411705:14412774:-1 9/11 None
F23D12.2 ENSEMBL cdna:known chromosome:CEL140:X:14411337:14421391:-1 gene:F23D12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14411336-14421391(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23D12.2
Entrez Gene 181542 Entrez gene
SwissProt Q19761 EMBL-EBI
WormBase CE05700 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94618 Hypothetical protein F23D12.2 [Caenorhabditis elegans] emb|CAA94917.1| Hypothetical protein F23D12.2 [Caenorhabditis elegans] ref|NP_510401.1| F23D12.2 [Caenorhabditis elegans] 0.0
blast CAA94618 Hypothetical protein F23D12.2 [Caenorhabditis elegans] emb|CAA94917.1| Hypothetical protein F23D12.2 [Caenorhabditis elegans] ref|NP_510401.1| F23D12.2 [Caenorhabditis elegans] 1.0E-173
blast CAB03979 Hypothetical protein C49F5.6 [Caenorhabditis elegans] ref|NP_510007.1| C49F5.6 [Caenorhabditis elegans] 9.0E-21
blast CAB63202 Hypothetical protein F47H4.6 [Caenorhabditis elegans] ref|NP_507389.1| F47H4.6 [Caenorhabditis elegans] 4.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.0E-8
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.0E-8
Sequence
Target Sequence 
>C. ELEGANS:182237_AT
aaacaatctttgcaccgcggaatcagatgccaaaagatcccgtttcttcgaactgatgga
cgaaaaattgtcttcgctaccctcacagctatgtgtcgagcgacttgatatttatgtcaa
aaatcctatcgaactggaaacgattttgcaaaatatgaaacctgggatgctagaagagct
gcttgttctgacttcctattttcccgatacaaatgatgtacacgacatggaccaaatcgt
tgtgcttccacaatgggcgcatatcaacaagctattgatatgtctacgcagaaccaacat
ttcgctcctaaatgtcgtccacatgaaaaaagtttctatcactgataagataattacttt
ggatgaaattgtcaaatacaaaactgcactgcaaaacattcattccatgcaaaaaatgta
ccaccaaataacatgtaatttaagtcaagaagatctgaaaaatgcattcaatttaaacga
aacacttaacgaccgtggaactattttcggaaccctcacattgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACAATCTTTGCACCGCGGAATCA 300 129 6294 Antisense
GATCCCGTTTCTTCGAACTGATGGA 337 417 6329 Antisense
CGAAAAATTGTCTTCGCTACCCTCA 557 251 6354 Antisense
GCTACCCTCACAGCTATGTGTCGAG 53 303 6369 Antisense
GAAGAGCTGCTTGTTCTGACTTCCT 596 337 6466 Antisense
GACATGGACCAAATCGTTGTGCTTC 370 369 6517 Antisense
TGTGCTTCCACAATGGGCGCATATC 116 557 6534 Antisense
CTACGCAGAACCAACATTTCGCTCC 92 227 6577 Antisense
CGCTCCTAAATGTCGTCCACATGAA 267 255 6596 Antisense
AACTGCACTGCAAAACATTCATTCC 34 143 6675 Antisense
CTATTTTCGGAACCCTCACATTGTC 425 223 6794 Antisense
Sequence Source Affymetrix Proprietary Database