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[182236_at]

Description T08D10.3 /REP_DB=WormBase Gene ID /WP=CE03644 /TR=Q22344 /GB=CAA90638.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 41      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 21.1
(-1.7)
A 		57.4
(3)
A 		49
(1.9)
A 		10.6
(-3)
A 		47
B 35
(-0.6)
A 		11.4
(-3)
A 		70.7
(3)
A 		41.7
(0.1)
A 		59
C 38.8
(-1.5)
A 		81.4
(3)
A 		25
(-3)
A 		65.6
(1.3)
A 		56
avr 31.6
(-3) 		50.1
(3) 		48.2
(2.4) 		39.3
(-0.5) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 4.8
(-3)
A 		23.3
(-1.1)
A 		48.1
(1.4)
A 		63.7
(3)
A 		62
(2.8)
A 		53
(1.9)
A 		59
B 33.6
(-0.6)
A 		61.7
(3)
A 		50.4
(1.5)
A 		55.7
(2.2)
A 		15.1
(-3)
A 		23.8
(-1.9)
A 		47
C 40.5
(-0.9)
A 		55.4
(0.8)
A 		65.2
(1.9)
A 		74.6
(3)
A 		42.9
(-0.7)
A 		22.8
(-3)
A 		52
avr 26.3
(-3) 		46.8
(0.2) 		54.6
(1.4) 		64.7
(3) 		40
(-0.9) 		33.2
(-1.9) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 7.7
(0.3)
A 		12.5
(2.8)
A 		12.8
(3)
A 		1.5
(-3)
A 		11
B 11.2
(0.7)
A 		2.8
(-3)
A 		16.4
(3)
A 		8.9
(-0.3)
A 		14
C 12.8
(-1.3)
A 		23.4
(3)
A 		8.7
(-3)
A 		11.1
(-2)
A 		15
avr 10.6
(0.6) 		12.9
(3) 		12.6
(2.7) 		7.2
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.9
(-3)
A 		8.3
(-0.5)
A 		10.5
(0.2)
A 		16.2
(2.2)
A 		18.7
(3)
A 		12.9
(1)
A 		18
B 11.7
(-0.7)
A 		20.5
(3)
A 		12.2
(-0.5)
A 		14.8
(0.6)
A 		6.1
(-3)
A 		8.9
(-1.8)
A 		14
C 15
(1.8)
A 		16.9
(3)
A 		16.6
(2.8)
A 		15
(1.8)
A 		13.9
(1.1)
A 		7.6
(-3)
A 		9
avr 9.2
(-3) 		15.2
(2.9) 		13.1
(0.8) 		15.3
(3) 		12.9
(0.6) 		9.8
(-2.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182236_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17178
Sequence Type Exemplar sequence
Representative Public ID T08D10.3 NCBI
Target Description T08D10.3 /REP_DB=WormBase Gene ID /WP=CE03644 /TR=Q22344 /GB=CAA90638.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077600 NCBI Caenorhabditis elegans T08D10.3 (T08D10.3) mRNA, complete cds. 11/11 None
SNAP00000039809 ENSEMBL cdna:SNAP chromosome:CEL140:X:11957535:11958297:1 9/11 None
T08D10.3 ENSEMBL cdna:known chromosome:CEL140:X:11955362:11958297:1 gene:T08D10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039812 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11955361-11958297(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08D10.3
Entrez Gene 188286 Entrez gene
SwissProt Q22344 EMBL-EBI
WormBase CE03644 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90638 Hypothetical protein T08D10.3 [Caenorhabditis elegans] ref|NP_510001.1| T08D10.3 [Caenorhabditis elegans] 0.0
blast CAA90638 Hypothetical protein T08D10.3 [Caenorhabditis elegans] ref|NP_510001.1| T08D10.3 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510001.1 2 267-289,433-455
T08D10.3 2 267-289,433-455
SNAP00000039809 1 147-169
Sequence
Target Sequence 
>C. ELEGANS:182236_AT
gtcacggtgctaaaattcttcttcttatcttcgcacgcgatgagttataattctgcaagt
tcatccaatattatcacaaagccaattaacacatcctttgcattatatgacacaggattc
ccgcttactcatttcgaagtaacaatggataacaacacaacatttttcattttacgagat
aactctggaattgtttatcaaattactctcgattatatctatcgcgaacttgcttcgatt
ggagacaacgaaatttttttgattgtcaatgtatcccactccggagttgatttgctttta
acaacgtgtgatgatgagaaaataggccttagacggaatgttgtttttcatgagtttaaa
ctaagcaaaagctcaccacagttgagtgaggaatgtatcaatttgcaagttatctcgtca
gatgaacctgtcaatggccaaatttcggtgcaaatcaagccgattcaaagaaggacccat
ttgaatattatacttgctgtcacttttagtttcgtaatgtgtatgttgctcattcgccaa
tgtgctaaacaaattcttctcatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACGGTGCTAAAATTCTTCTTCT 134 465 832 Antisense
TCTTCTTATCTTCGCACGCGATGAG 235 617 851 Antisense
AGCCAATTAACACATCCTTTGCATT 226 83 911 Antisense
TATGACACAGGATTCCCGCTTACTC 51 657 937 Antisense
ATTCCCGCTTACTCATTTCGAAGTA 325 9 948 Antisense
TTGATTGTCAATGTATCCCACTCCG 338 705 1090 Antisense
CCCACTCCGGAGTTGATTTGCTTTT 123 259 1106 Antisense
GAACCTGTCAATGGCCAAATTTCGG 588 345 1255 Antisense
GAATATTATACTTGCTGTCACTTTT 30 327 1314 Antisense
ATGTGTATGTTGCTCATTCGCCAAT 417 49 1348 Antisense
GTGCTAAACAAATTCTTCTCATCGT 97 481 1373 Antisense
Sequence Source Affymetrix Proprietary Database