[Home] | [Total List]

[182235_at]

Description T05C1.1 /REP_DB=WormBase Gene ID /WP=CE02859 /TR=Q22217 /GB=AAA68389.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 0      4grp_high_8_8 > 45      6grp_highest_nonorm > 71      6grp_total > 29      4grp_total > 51      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 146.8
(-2.3)
P 		265.2
(3)
P 		180
(-0.8)
P 		131.5
(-3)
P 		134
B 138.5
(-1.6)
P 		238.8
(3)
P 		205.9
(1.5)
P 		106.9
(-3)
P 		132
C 182.8
(-0.4)
P 		312.4
(3)
P 		219.7
(0.6)
P 		82
(-3)
P 		230
avr 156
(-1.2) 		272.1
(3) 		201.9
(0.5) 		106.8
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 388.5
(0.8)
P 		281.7
(-1.6)
P 		230.6
(-2.7)
P 		304.1
(-1.1)
P 		488.2
(3)
P 		217.5
(-3)
P 		271
B 416.5
(1.1)
P 		290
(-1.7)
P 		260.1
(-2.4)
P 		316.3
(-1.1)
P 		498.7
(3)
P 		234.8
(-3)
P 		264
C 462.8
(3)
P 		255.4
(-2.4)
P 		232.5
(-3)
P 		269
(-2)
P 		449.4
(2.7)
P 		266.5
(-2.1)
P 		230
avr 422.6
(1.6) 		275.7
(-2.1) 		241.1
(-3) 		296.5
(-1.6) 		478.8
(3) 		239.6
(-3) 		239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 53.5
(2.4)
P 		57.6
(3)
P 		47.1
(1.4)
P 		19.2
(-3)
P 		38
B 44.2
(0.5)
P 		59
(3)
P 		47.7
(1.1)
P 		22.8
(-3)
P 		36
C 60.5
(0.7)
P 		89.8
(3)
P 		76.6
(2)
P 		13.8
(-3)
P 		76
avr 52.7
(1.1) 		68.8
(3) 		57.1
(1.6) 		18.6
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 71.6
(-1.7)
P 		100.2
(0.1)
P 		50.2
(-3)
P 		77.1
(-1.3)
P 		147.3
(3)
P 		53
(-2.8)
P 		97
B 144.9
(0.5)
P 		96.5
(-1.6)
P 		63.2
(-3)
P 		83.8
(-2.1)
P 		202.6
(3)
P 		87.5
(-2)
P 		139
C 171.5
(3)
P 		77.9
(-1.8)
P 		59.2
(-2.7)
P 		54.1
(-3)
P 		145.4
(1.7)
P 		89.2
(-1.2)
P 		117
avr 129.3
(1) 		91.5
(-1.1) 		57.5
(-3) 		71.7
(-2.2) 		165.1
(3) 		76.6
(-1.9) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182235_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5629
Sequence Type Exemplar sequence
Representative Public ID T05C1.1 NCBI
Target Description T05C1.1 /REP_DB=WormBase Gene ID /WP=CE02859 /TR=Q22217 /GB=AAA68389.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062390(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062390 NCBI Caenorhabditis elegans T05C1.1 (T05C1.1) mRNA, complete cds. 11/11 None
SNAP00000008475 ENSEMBL cdna:SNAP chromosome:CEL140:II:4478868:4480757:1 11/11 None
GENEFINDER00000008482 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4478618:4480757:1 11/11 None
T05C1.1 ENSEMBL cdna:known chromosome:CEL140:II:4478618:4480757:1 gene:T05C1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4478616-4480756(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05C1.1
Entrez Gene 188112 Entrez gene
SwissProt Q22217 EMBL-EBI
WormBase CE02859 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68389 Hypothetical protein T05C1.1 [Caenorhabditis elegans] ref|NP_494791.1| T05C1.1 [Caenorhabditis elegans] 1.0E-143
blast AAA68389 Hypothetical protein T05C1.1 [Caenorhabditis elegans] ref|NP_494791.1| T05C1.1 [Caenorhabditis elegans] 1.0E-105
blast CAE67886 Hypothetical protein CBG13481 [Caenorhabditis briggsae] 8.0E-69
blast CAE67886 Hypothetical protein CBG13481 [Caenorhabditis briggsae] 4.0E-46
Sequence
Target Sequence 
>C. ELEGANS:182235_AT
cctatgataaccgatgtgcctgctcaacatttgataattgtaacaacccaaatgtttcaa
tttccaactacaccttcaccgaatctccagtgctcgaaaactatcaatgggtcccacaaa
tccagccaccaatgccatccatccaaccaatacttccaccaaaagatatcccaatcggtg
gagatttaaacgaaactgtcacagagttggaaaatggagtggaagatgatttggagaagg
agttggacgaacggacgaatgccacacagattttgcgaaacgaagagaatgacgatttgt
tgacagtgacaacatctgtcggattaaacattcgagatcatacgaacaggatcaacacca
gttctgctaacaatacgtccacttcccaacagaatgtggtggtagagacatcaacgacag
gaacgagcttcacacccggccacggaagcgtcgaagttaccaaggtcacccaagaagcct
caccaccaaagttgaacccatcgaacagaaatcttacaactgacggaacccaaaaccggg
acccgaattcaacaggaagctggaagcttttcattgttgcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTATGATAACCGATGTGCCTGCTC 140 267 251 Antisense
GTTTCAATTTCCAACTACACCTTCA 498 449 304 Antisense
TCAATGGGTCCCACAAATCCAGCCA 635 631 354 Antisense
GACGAACGGACGAATGCCACACAGA 165 381 496 Antisense
AACAGGATCAACACCAGTTCTGCTA 346 137 595 Antisense
AGTTCTGCTAACAATACGTCCACTT 452 63 610 Antisense
CAACGACAGGAACGAGCTTCACACC 262 187 662 Antisense
GAAGCGTCGAAGTTACCAAGGTCAC 641 341 695 Antisense
TACCAAGGTCACCCAAGAAGCCTCA 334 649 708 Antisense
GAAATCTTACAACTGACGGAACCCA 188 363 758 Antisense
GCTGGAAGCTTTTCATTGTTGCACT 139 295 809 Antisense
Sequence Source Affymetrix Proprietary Database