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[182234_at]

Description C55B6.5 /REP_DB=WormBase Gene ID /WP=CE09011 /TR=P91191 /GB=AAB42304.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 5.4
(-2.8)
A 		3.9
(-2.9)
A 		3.1
(-3)
A 		83.9
(3)
P 		81
B 3
(-2.8)
A 		1.8
(-3)
A 		24
(0.3)
A 		42.3
(3)
A 		41
C 1.6
(-2.9)
A 		6.2
(-2.5)
A 		0.9
(-3)
A 		60.6
(3)
A 		60
avr 3.3
(-3) 		4
(-2.9) 		9.3
(-2.4) 		62.3
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.5
(-3)
A 		1.6
(-2.9)
A 		25.8
(2.8)
A 		26.8
(3)
A 		19.7
(1.3)
A 		1.3
(-3)
A 		26
B 3.6
(-2.1)
A 		13.5
(2.4)
A 		1.8
(-2.9)
A 		1.5
(-3)
A 		14.8
(3)
A 		7.2
(-0.4)
A 		13
C 10.9
(0.6)
A 		17.9
(3)
A 		2.1
(-2.5)
A 		1.4
(-2.7)
A 		16.7
(2.6)
A 		0.6
(-3)
A 		17
avr 5.3
(-2) 		11
(0.4) 		9.9
(-0.1) 		9.9
(-0.1) 		17.1
(3) 		3
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2
(-2.4)
A 		0.8
(-3)
A 		0.8
(-3)
A 		12.3
(3)
P 		12
B 0.9
(-2.7)
A 		0.4
(-3)
A 		5.6
(0.6)
A 		9
(3)
A 		9
C 0.5
(-2.9)
A 		1.8
(-2.1)
A 		0.3
(-3)
A 		10.2
(3)
A 		10
avr 1.1
(-2.9) 		1
(-3) 		2.2
(-2.2) 		10.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.6
(-2.7)
A 		5.6
(1.9)
A 		6.8
(3)
A 		6
(2.3)
A 		0.3
(-3)
A 		7
B 1.3
(-2)
A 		4.5
(1.4)
A 		0.4
(-3)
A 		0.4
(-3)
A 		6
(3)
A 		2.7
(-0.5)
A 		6
C 4
(1.3)
A 		5.5
(3)
A 		0.5
(-2.7)
A 		0.3
(-2.9)
A 		5.4
(2.9)
A 		0.2
(-3)
A 		5
avr 1.9
(-2) 		3.5
(0.1) 		2.2
(-1.6) 		2.5
(-1.2) 		5.8
(3) 		1.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182234_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17170
Sequence Type Exemplar sequence
Representative Public ID C55B6.5 NCBI
Target Description C55B6.5 /REP_DB=WormBase Gene ID /WP=CE09011 /TR=P91191 /GB=AAB42304.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076810 NCBI Caenorhabditis elegans C55B6.5 (C55B6.5) mRNA, complete cds. 11/11 None
C55B6.5 ENSEMBL cdna:known chromosome:CEL140:X:7204690:7205331:-1 gene:C55B6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7204688-7205330(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C55B6.5
Entrez Gene 183840 Entrez gene
SwissProt P91191 EMBL-EBI
WormBase CE09011 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42304 Hypothetical protein C55B6.5 [Caenorhabditis elegans] ref|NP_509211.1| C55B6.5 [Caenorhabditis elegans] 5.0E-78
blast CAA88975 Hypothetical protein ZC373.3 [Caenorhabditis elegans] ref|NP_509688.1| ZC373.3 [Caenorhabditis elegans] 3.0E-19
Sequence
Target Sequence 
>C. ELEGANS:182234_AT
aaaagcccacgatttcacgtgagaaacagcagaaatcatcttcaggagtttttaaaactt
tctttcgagtgccatatcttaaaatatatcaacttatttaggagtcttctggtcaaagat
cggcttcttgccaaacaatacaagttgacgactaaaattggcgctggagacgttggacaa
gtttggcagtgtaccgacagactggatgagaataagctaaaaattgtgaaaatcatcaac
aaatacgttggaggagttggacctaaagatgactcatttgccaacgaagttgagttttat
aagaaatgtttgacgagaagattcaatttgaaacgaacccaagtgagattctatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGCCCACGATTTCACGTGAGAA 704 131 31 Antisense
GCAGAAATCATCTTCAGGAGTTTTT 412 313 59 Antisense
AACTTTCTTTCGAGTGCCATATCTT 309 139 86 Antisense
GGAGTCTTCTGGTCAAAGATCGGCT 76 517 131 Antisense
AAGATCGGCTTCTTGCCAAACAATA 416 155 146 Antisense
GTTGACGACTAAAATTGGCGCTGGA 469 305 174 Antisense
TGGCGCTGGAGACGTTGGACAAGTT 402 543 189 Antisense
GGACAAGTTTGGCAGTGTACCGACA 692 523 205 Antisense
GGCAGTGTACCGACAGACTGGATGA 151 537 215 Antisense
AAAGATGACTCATTTGCCAACGAAG 424 123 295 Antisense
AACGAACCCAAGTGAGATTCTATCA 41 145 362 Antisense
Sequence Source Affymetrix Proprietary Database