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[182233_at]

Description C04F5.2 /REP_DB=WormBase Gene ID /WP=CE19666 /TR=Q9GZD6 /GB=AAF98592.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 30      4grp_high_8_8 > 27      6grp_total > 35      4grp_total > 29      6grp_high1_sub > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 91
(1.9)
P 		104.8
(3)
P 		28.7
(-3)
A 		76.3
(0.8)
P 		76
B 86
(3)
P 		44.7
(-2.2)
P 		38.4
(-3)
P 		65
(0.4)
P 		48
C 74.6
(-1.2)
P 		82.2
(-0.3)
P 		57.8
(-3)
P 		112.3
(3)
P 		55
avr 83.9
(2.9) 		77.2
(2) 		41.6
(-3) 		84.5
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 83.3
(3)
P 		64.1
(0.5)
P 		63.6
(0.4)
P 		42.7
(-2.4)
A 		37.9
(-3)
A 		56.5
(-0.5)
P 		45
B 60.7
(-2.2)
P 		68.5
(-1.5)
P 		116.1
(3)
P 		54.4
(-2.8)
P 		52.3
(-3)
P 		52.7
(-3)
P 		64
C 58.5
(-0.3)
P 		92.9
(3)
P 		29.7
(-3)
A 		85.4
(2.3)
P 		49.4
(-1.1)
P 		70.6
(0.9)
P 		63
avr 67.5
(1.4) 		75.2
(3) 		69.8
(1.9) 		60.8
(-0) 		46.5
(-3) 		59.9
(-0.2) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 33.1
(3)
P 		22.7
(0.6)
P 		7.5
(-3)
A 		11.2
(-2.1)
P 		26
B 27.4
(3)
P 		11
(-2.3)
P 		8.9
(-3)
P 		13.9
(-1.4)
P 		19
C 24.7
(3)
P 		23.6
(1.9)
P 		20.1
(-1.8)
P 		18.9
(-3)
P 		6
avr 28.4
(3) 		19.1
(-0.4) 		12.2
(-3) 		14.7
(-2.1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 15.4
(-0.7)
P 		22.8
(3)
P 		13.9
(-1.5)
P 		10.8
(-3)
A 		11.4
(-2.7)
A 		13.8
(-1.5)
P 		12
B 21.1
(-0.1)
P 		22.8
(0.7)
P 		28.2
(3)
P 		14.4
(-3)
P 		21.3
(0)
P 		19.6
(-0.7)
P 		14
C 21.7
(1.1)
P 		28.4
(3)
P 		7.6
(-3)
A 		17.2
(-0.2)
P 		16
(-0.6)
P 		23.6
(1.6)
P 		21
avr 19.4
(-0) 		24.7
(3) 		16.6
(-1.6) 		14.1
(-3) 		16.2
(-1.8) 		19
(-0.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182233_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15800
Sequence Type Exemplar sequence
Representative Public ID C04F5.2 NCBI
Target Description C04F5.2 /REP_DB=WormBase Gene ID /WP=CE19666 /TR=Q9GZD6 /GB=AAF98592.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071963
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000034416 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5093528:5096090:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071963 3/11 Cross Hyb Matching Probes None
SNAP00000034401 5/11 Cross Hyb Matching Probes None
C04F5.2 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5093527-5096090(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE64069 Hypothetical protein CBG08671 [Caenorhabditis briggsae] 1.0E-130
blast AAF98592 Hypothetical protein C04F5.2 [Caenorhabditis elegans] ref|NP_504364.2| C04F5.2 [Caenorhabditis elegans] 2.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034416 7 36-58,71-93,108-130,183-205,210-228,235-257,332-354
Sequence
Target Sequence 
>C. ELEGANS:182233_AT
tgggcggtctcttatgaaactgtccgtacttggtggctctttttaatttcagtctgccta
tctgtaactggatatatctactttgcttcctttaggtgcagaggttgtattgtgtcagca
gttgtcacgatcataattatcgggggctgcatagctttatattttttgaatcgaaaatgg
acaattctctatcaaaaagatatatcatttatgggaaaagtttcgctgtctatgcgatat
caaattatagagaatatgataagtgtacgaaaagcattgcttccagtgataatattggat
agtctagtgacattagttgatgcattgagcagtaaagttacaacaaaaatagaagaacaa
agtaatgcaatgtgctactctatgacaaactacattccatatatcttgctcaatcatctt
gcgatggtttttgagtacagtattccactgtatatgttgtttagaaaagcatatagcaaa
aaactcccaaatgtctgccaccgtattcggccgattgcccgaattcaacaatctcgtgaa
agtatgatccagaacgtttttggcaaagagctcaacgtggtgccaacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGCGGTCTCTTATGAAACTGTCC 101 553 517 Antisense
TGAAACTGTCCGTACTTGGTGGCTC 387 573 531 Antisense
GGTGGCTCTTTTTAATTTCAGTCTG 97 497 548 Antisense
AATTTCAGTCTGCCTATCTGTAACT 363 175 561 Antisense
ATCTACTTTGCTTCCTTTAGGTGCA 384 29 592 Antisense
TGTCAGCAGTTGTCACGATCATAAT 405 557 629 Antisense
AACTACATTCCATATATCTTGCTCA 49 141 904 Antisense
ATCTTGCTCAATCATCTTGCGATGG 407 31 919 Antisense
CCAAATGTCTGCCACCGTATTCGGC 39 277 1003 Antisense
TCGGCCGATTGCCCGAATTCAACAA 316 607 1023 Antisense
AAAGAGCTCAACGTGGTGCCAACGC 371 119 1081 Antisense
Sequence Source Affymetrix Proprietary Database