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[182232_at]

Description T07G12.6 /REP_DB=WormBase Gene ID /WP=CE13397 /TR=O18064 /GB=CAB05277.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 01      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 37.4
(-1.6)
A 		7
(-3)
A 		58.6
(-0.7)
A 		140.8
(3)
A 		134
B 32.2
(-1.5)
A 		28.4
(-1.8)
A 		13.7
(-3)
A 		86.9
(3)
A 		73
C 28.6
(-3)
A 		36.7
(-1)
A 		38.4
(-0.5)
A 		52.4
(3)
A 		24
avr 32.7
(-2.2) 		24
(-3) 		36.9
(-1.9) 		93.4
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 49.2
(-2.1)
A 		15.2
(-3)
A 		81.5
(-1.3)
A 		98.2
(-0.9)
A 		213.8
(2.1)
P 		249.4
(3)
P 		234
B 2.7
(-3)
A 		29.6
(-2.4)
A 		75.4
(-1.4)
A 		68.1
(-1.6)
A 		227.5
(1.8)
P 		283.2
(3)
P 		281
C 25.3
(-3)
A 		38.8
(-2.7)
A 		37.7
(-2.7)
A 		79.8
(-1.9)
A 		194.8
(0.6)
P 		310.9
(3)
P 		286
avr 25.7
(-3) 		27.9
(-2.9) 		64.9
(-2.1) 		82
(-1.7) 		212
(1.4) 		281.2
(3) 		256
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13.6
(0.8)
A 		1.5
(-3)
A 		15.3
(1.3)
A 		20.6
(3)
A 		19
B 10.3
(-0.2)
A 		7
(-1.5)
A 		3.2
(-3)
A 		18.5
(3)
A 		15
C 9.5
(-2.1)
A 		10.5
(-0.8)
A 		13.4
(3)
A 		8.8
(-3)
A 		5
avr 11.1
(-0) 		6.3
(-3) 		10.6
(-0.3) 		16
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 9.1
(-2.6)
A 		5.4
(-3)
A 		17.7
(-1.8)
A 		24.9
(-1)
A 		64.5
(3)
P 		60.7
(2.6)
P 		59
B 0.9
(-3)
A 		9.8
(-2.5)
A 		18.3
(-2)
A 		18
(-2)
A 		92.4
(2.2)
P 		105.6
(3)
P 		105
C 9.4
(-3)
A 		11.9
(-2.8)
A 		9.6
(-3)
A 		16.1
(-2.6)
A 		63
(0.4)
P 		104.1
(3)
P 		95
avr 6.5
(-3) 		9
(-2.8) 		15.2
(-2.4) 		19.7
(-2.1) 		73.3
(1.8) 		90.1
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9763
Sequence Type Exemplar sequence
Representative Public ID T07G12.6 NCBI
Target Description T07G12.6 /REP_DB=WormBase Gene ID /WP=CE13397 /TR=O18064 /GB=CAB05277.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069547 NCBI Caenorhabditis elegans T07G12.6 (T07G12.6) mRNA, complete cds. 11/11 None
SNAP00000026259 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10547060:10548444:1 11/11 None
GENEFINDER00000026271 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10547060:10549072:1 11/11 None
T07G12.6 ENSEMBL cdna:known chromosome:CEL140:IV:10547060:10548444:1 gene:T07G12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10547065-10548450(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol zim-1
Ensembl T07G12.6
Entrez Gene 3565259 Entrez gene
SwissProt O18064 EMBL-EBI
WormBase CE38977 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501948 T07G12.6 [Caenorhabditis elegans] 0.0
blast CAB05277 Hypothetical protein T07G12.6 [Caenorhabditis elegans] 0.0
blast CAB05278 Hypothetical protein T07G12.11 [Caenorhabditis elegans] ref|NP_501953.1| T07G12.11 [Caenorhabditis elegans] 1.0E-150
Sequence
Target Sequence 
>C. ELEGANS:182232_AT
gtcaaagtagagcctgcagtttcaaaattaacgaagagaagacggctcacaccggttgaa
tgttcaagtgaaactatgattccacactcccaaccaataccactggatacttgctcagat
caacccatttttcccaattcgacacacaatgctattcaatctgatggattctcatatgaa
caacctatttgtgaatttggagatagtcaattgtttttgtcagcaaaaagtctttgcact
gagccgaacagttctattgctgaggatgtgaagccggttttgacagtttcggattccgac
ataacagcttccaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAAGTAGAGCCTGCAGTTTCAA 8 465 787 Antisense
GAAGAGAAGACGGCTCACACCGGTT 352 339 819 Antisense
GGCTCACACCGGTTGAATGTTCAAG 368 539 830 Antisense
TGAAACTATGATTCCACACTCCCAA 431 573 855 Antisense
CACTCCCAACCAATACCACTGGATA 61 199 871 Antisense
GATACTTGCTCAGATCAACCCATTT 574 423 892 Antisense
TTCCCAATTCGACACACAATGCTAT 489 697 917 Antisense
CACACAATGCTATTCAATCTGATGG 289 195 929 Antisense
GCACTGAGCCGAACAGTTCTATTGC 54 317 1022 Antisense
GTTTTGACAGTTTCGGATTCCGACA 73 447 1063 Antisense
GATTCCGACATAACAGCTTCCAACA 441 433 1078 Antisense
Sequence Source Affymetrix Proprietary Database