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[182230_at] 7TM chemoreceptor, srg family

Description F26B1.6 /REP_DB=WormBase Gene ID /WP=CE09678 /TR=P91275 /GB=AAB37789.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 12      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 28.4
(0.2)
M 		30.5
(0.6)
A 		7.3
(-3)
A 		46.5
(3)
A 		39
B 24.3
(-2.2)
A 		35.1
(3)
P 		22.7
(-3)
A 		28.5
(-0.2)
A 		12
C 24
(-1.5)
M 		2
(-3)
A 		4.9
(-2.8)
A 		92.5
(3)
P 		91
avr 25.6
(-1.1) 		22.5
(-1.5) 		11.6
(-3) 		55.8
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 10.6
(-2.2)
A 		17.2
(-0.9)
A 		13.9
(-1.6)
A 		19.9
(-0.4)
A 		37.2
(3)
A 		6.6
(-3)
A 		31
B 29.5
(3)
A 		25.8
(2.1)
A 		27.9
(2.6)
P 		28.4
(2.7)
A 		18.9
(0.3)
A 		6
(-3)
A 		24
C 18.7
(-0.5)
A 		41.9
(3)
M 		22.5
(0.1)
A 		16.6
(-0.8)
A 		2
(-3)
A 		16.2
(-0.9)
A 		40
avr 19.6
(0.2) 		28.3
(3) 		21.4
(0.8) 		21.6
(0.9) 		19.4
(0.1) 		9.6
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 10.4
(3)
M 		6.6
(0.3)
A 		1.9
(-3)
A 		6.8
(0.5)
A 		9
B 7.8
(1.4)
A 		8.7
(3)
P 		5.3
(-3)
A 		6.1
(-1.6)
A 		3
C 7.9
(-0.1)
M 		0.6
(-3)
A 		1.7
(-2.6)
A 		15.6
(3)
P 		15
avr 8.7
(2.3) 		5.3
(-0.9) 		3
(-3) 		9.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2
(-2.8)
A 		6.1
(-0.2)
A 		3
(-2.1)
A 		5.1
(-0.8)
A 		11.2
(3)
A 		1.6
(-3)
A 		10
B 10.3
(3)
A 		8.6
(1.7)
A 		6.8
(0.4)
P 		7.5
(0.9)
A 		7.7
(1.1)
A 		2.2
(-3)
A 		8
C 6.9
(0.1)
A 		12.8
(3)
M 		5.7
(-0.5)
A 		3.3
(-1.7)
A 		0.6
(-3)
A 		5.4
(-0.6)
A 		12
avr 6.4
(0.2) 		9.2
(3) 		5.2
(-0.9) 		5.3
(-0.8) 		6.5
(0.3) 		3.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182230_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1022
Sequence Type Exemplar sequence
Representative Public ID F26B1.6 NCBI
Target Description F26B1.6 /REP_DB=WormBase Gene ID /WP=CE09678 /TR=P91275 /GB=AAB37789.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059422 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-14) (srg-14) mRNA, complete cds. 11/11 None
F26B1.6 ENSEMBL cdna:known chromosome:CEL140:I:6320885:6322727:1 gene:F26B1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041723 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6320813-6322656(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-14
Ensembl F26B1.6
Entrez Gene 184958 Entrez gene
SwissProt P91275 EMBL-EBI
WormBase CE09678 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491823 Serpentine Receptor, class G (gamma) family member (srg-14) [Caenorhabditis elegans] gb|AAB37789.1| Serpentine receptor, class g (gamma) protein 14 [Caenorhabditis elegans] sp|P91275|SRG14_CAEEL Serpentine receptor class gamma-14 (Protein srg-14) 0.0
blast CAA84735 Hypothetical protein T04A8.2 [Caenorhabditis elegans] ref|NP_497955.2| Serpentine Receptor, class G (gamma) family member (srg-11) [Caenorhabditis elegans] sp|P46569|SRG11_CAEEL Serpentine receptor class gamma-11 (Protein srg-11) 9.0E-84
blast 2123261AL chemosensory receptor 7.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491823.1 7 33-55,67-89,115-137,158-180,203-225,237-259,272-294
F26B1.6 7 33-55,67-89,115-137,158-180,203-225,237-259,272-294
Sequence
Target Sequence 
>C. ELEGANS:182230_AT
gaatgacgtgtgtcctgtttccaataacgcacgattcaatatggagaaaaagcttgaaat
atgtgattagtgcagtttttttaattccattttgtgctgactggaatattgctatatctc
gagtttacatgcaatccacgtatggaggtttctgggttagctatttcaagaaagttagct
gggcaagccaatctcgttttcaacttgtttttattattattgcattatcatttacattta
tatgcactgcaattactttgttaaaacttccagaaagatcaaaagaaatagaaaaagcaa
tctctaatgcaacggttatcatatccattgggttcacttttaaagttttatttcagatat
actacagctttttcttctcatacactgatgcatcaagccccgtttatggatttagctttt
tagctctagactttttaactgttggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGACGTGTGTCCTGTTTCCAAT 37 331 425 Antisense
GTCCTGTTTCCAATAACGCACGATT 178 477 436 Antisense
TATCTCGAGTTTACATGCAATCCAC 461 657 539 Antisense
GGAGGTTTCTGGGTTAGCTATTTCA 261 515 568 Antisense
GTTAGCTGGGCAAGCCAATCTCGTT 616 445 598 Antisense
GCCAATCTCGTTTTCAACTTGTTTT 438 277 611 Antisense
GCAACGGTTATCATATCCATTGGGT 501 317 733 Antisense
GATATACTACAGCTTTTTCTTCTCA 48 427 780 Antisense
TTTTCTTCTCATACACTGATGCATC 133 677 794 Antisense
ATGCATCAAGCCCCGTTTATGGATT 22 43 812 Antisense
GCTCTAGACTTTTTAACTGTTGGTT 471 299 847 Antisense
Sequence Source Affymetrix Proprietary Database