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[182229_at]

Description C36C5.4 /REP_DB=WormBase Gene ID /WP=CE08593 /TR=O16409 /GB=AAB65928.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.3
(-3)
A 		11.3
(3)
A 		6.4
(-1.2)
A 		10.3
(2.1)
A 		7
B 10.7
(0.8)
A 		4.3
(-3)
A 		14.5
(3)
A 		11.4
(1.2)
A 		10
C 6.2
(1.1)
A 		4.1
(-3)
A 		4.1
(-3)
A 		7.2
(3)
A 		3
avr 7.1
(-2) 		6.6
(-3) 		8.3
(0.4) 		9.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 22.4
(3)
A 		10.3
(-1)
A 		6.2
(-2.4)
A 		4.3
(-3)
A 		11.6
(-0.6)
A 		5.8
(-2.5)
A 		18
B 3.9
(-2.5)
A 		5.5
(-2.2)
A 		36.2
(3)
A 		6.1
(-2.1)
A 		12.2
(-1.1)
A 		1
(-3)
A 		35
C 11.3
(-2.2)
A 		57
(3)
A 		8.5
(-2.5)
A 		8.8
(-2.5)
A 		8.8
(-2.5)
A 		4
(-3)
A 		53
avr 12.5
(-0.4) 		24.3
(3) 		17
(0.9) 		6.4
(-2.2) 		10.9
(-0.9) 		3.6
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.6
(-2.4)
A 		2.5
(3)
A 		1.7
(-1.8)
A 		1.5
(-3)
A 		1
B 3.4
(3)
A 		1.1
(-3)
A 		3.3
(2.7)
A 		2.4
(0.4)
A 		2
C 2.1
(3)
A 		1.2
(-3)
A 		1.4
(-1.7)
A 		1.2
(-3)
A 		1
avr 2.4
(3) 		1.6
(-3) 		2.1
(0.8) 		1.7
(-2.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.1
(3)
A 		3.7
(2.2)
A 		1.4
(-2.4)
A 		1.1
(-3)
A 		3.5
(1.8)
A 		1.4
(-2.4)
A 		3
B 1.3
(-2.4)
A 		1.8
(-2)
A 		8.8
(3)
A 		1.6
(-2.1)
A 		5
(0.3)
A 		0.4
(-3)
A 		8
C 4.2
(-1.9)
A 		17.4
(3)
A 		2.2
(-2.7)
A 		1.8
(-2.8)
A 		2.8
(-2.4)
A 		1.3
(-3)
A 		16
avr 3.2
(-1) 		7.6
(3) 		4.1
(-0.2) 		1.5
(-2.5) 		3.8
(-0.5) 		1
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182229_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15137
Sequence Type Exemplar sequence
Representative Public ID C36C5.4 NCBI
Target Description C36C5.4 /REP_DB=WormBase Gene ID /WP=CE08593 /TR=O16409 /GB=AAB65928.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071471(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071471 NCBI Caenorhabditis elegans C36C5.4 (C36C5.4) mRNA, complete cds. 11/11 None
SNAP00000036661 ENSEMBL cdna:SNAP chromosome:CEL140:V:3166387:3167095:1 11/11 None
GENEFINDER00000036670 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3166387:3167095:1 11/11 None
C36C5.4 ENSEMBL cdna:known chromosome:CEL140:V:3166387:3167095:1 gene:C36C5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3166386-3167095(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36C5.4
Entrez Gene 183260 Entrez gene
SwissProt O16409 EMBL-EBI
WormBase CE08593 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503872 C36C5.4 [Caenorhabditis elegans] gb|AAB65928.1| Hypothetical protein C36C5.4 [Caenorhabditis elegans] 1.0E-106
blast AAC04398 Hypothetical protein C17B7.4 [Caenorhabditis elegans] ref|NP_503926.1| C17B7.4 [Caenorhabditis elegans] 2.0E-51
blast NP_503895 T28A11.16 [Caenorhabditis elegans] gb|AAC48125.1| Hypothetical protein T28A11.16 [Caenorhabditis elegans] 4.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 5.6E-89
Sequence
Target Sequence 
>C. ELEGANS:182229_AT
ttgcttggagcacttctactggcactcggaaatggagccccacagatttcgaacaatgaa
acaagtgtcattgagtcaggagctgggaaaaattgcaccgaagtcactttcaaaacagtt
ttcagttgcatttatagctttggaagttttatggcgaaaatgtattttttggacatgaag
aaaccttctagtctaaagaaattccgcgactcgtgcggtgcggttgccgattgtatggag
tctcttgagtgcagcgataatgcagaacttccggcaacgacaacagtcaaagatgcttgt
gagaatattatcttcttaacctcagaatttcttccatgcctaacaaagctggatgaactg
aaaccggcgcccgagtgtgccaaggactggaacccatctccagataaaaatggaagtggt
gaagagaagaagccagaagaattgtgcaccaccatgttcggaaaagacaattgcatgaag
aaattgatcattgatacttgtggagagagtgattggcaacttttgttgaatcgtttcaaa
gcagcacctgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTTGGAGCACTTCTACTGGCAC 269 703 37 Antisense
TGGCACTCGGAAATGGAGCCCCACA 126 547 56 Antisense
AGAAATTCCGCGACTCGTGCGGTGC 151 73 233 Antisense
GGTTGCCGATTGTATGGAGTCTCTT 343 507 258 Antisense
AGAACTTCCGGCAACGACAACAGTC 664 71 300 Antisense
AACCTCAGAATTTCTTCCATGCCTA 643 147 354 Antisense
AGCTGGATGAACTGAAACCGGCGCC 577 77 383 Antisense
TGCCAAGGACTGGAACCCATCTCCA 288 585 414 Antisense
GAAGCCAGAAGAATTGTGCACCACC 464 345 465 Antisense
GTGCACCACCATGTTCGGAAAAGAC 456 479 480 Antisense
GAATCGTTTCAAAGCAGCACCTGTC 236 329 564 Antisense
Sequence Source Affymetrix Proprietary Database