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[182228_s_at]

Description ZK1151.3 /REP_DB=WormBase Gene ID /WP=CE16766 /TR=O18292 /GB=CAB07723.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 16      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 21      6grp_total > 15      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1747
1 2 3 4 range
A 1657.4
(2.9)
P 		1674.9
(3)
P 		1211.9
(1.1)
P 		202.8
(-3)
P 		1472
B 1548.1
(1.7)
P 		1926.9
(3)
P 		1174.9
(0.4)
P 		220.3
(-3)
P 		1707
C 1420.3
(1.9)
P 		1697.9
(3)
P 		1296.2
(1.4)
P 		180.3
(-3)
P 		1518
avr 1541.9
(2.1) 		1766.6
(3) 		1227.7
(0.9) 		201.1
(-3) 		1566

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2440
1 2 3 4 5 6 range
A 1863.4
(1.5)
P 		2255
(3)
P 		830.4
(-2.4)
P 		834.4
(-2.4)
P 		676.4
(-3)
P 		802
(-2.5)
P 		1579
B 1835.4
(3)
P 		1555.4
(1.7)
P 		1017.4
(-0.8)
P 		801.5
(-1.8)
P 		578.2
(-2.8)
P 		530.7
(-3)
P 		1305
C 2845.8
(3)
P 		1440.3
(-0.5)
P 		1390.1
(-0.6)
P 		637.1
(-2.4)
P 		1051.9
(-1.4)
P 		406.3
(-3)
P 		2440
avr 2181.5
(3) 		1750.2
(1.4) 		1079.3
(-1.1) 		757.7
(-2.3) 		768.8
(-2.3) 		579.7
(-3) 		1602
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 574
1 2 3 4 range
A 603.5
(3)
P 		363.6
(0.5)
P 		316.8
(0)
P 		29.7
(-3)
P 		574
B 493.7
(3)
P 		475.9
(2.8)
P 		272.2
(0)
P 		46.9
(-3)
P 		447
C 470.2
(2.8)
P 		488.1
(3)
P 		451.7
(2.5)
P 		30.4
(-3)
P 		458
avr 522.5
(3) 		442.5
(2) 		346.9
(0.8) 		35.7
(-3) 		487

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 927
1 2 3 4 5 6 range
A 343.5
(-1.4)
P 		802
(3)
P 		180.8
(-3)
P 		211.6
(-2.7)
P 		204.1
(-2.8)
P 		195.3
(-2.9)
P 		621
B 638.6
(3)
P 		517.7
(1.4)
P 		247.1
(-2.3)
P 		212.3
(-2.8)
P 		234.9
(-2.5)
P 		197.9
(-3)
P 		441
C 1054.8
(3)
P 		439.5
(-1)
P 		353.8
(-1.5)
P 		128.1
(-3)
P 		340.4
(-1.6)
P 		136
(-2.9)
P 		927
avr 679
(3) 		586.4
(1.9) 		260.6
(-2) 		184
(-2.9) 		259.8
(-2) 		176.4
(-3) 		503
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182228_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1483
Sequence Type Exemplar sequence
Representative Public ID ZK1151.3 NCBI
Target Description ZK1151.3 /REP_DB=WormBase Gene ID /WP=CE16766 /TR=O18292 /GB=CAB07723.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026682(11), NM_001026686(11), NM_001026687(11), NM_001026685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026682 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
NM_001026686 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
NM_001026687 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
NM_001026685 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
SNAP00000012417 ENSEMBL cdna:SNAP chromosome:CEL140:I:11772959:11778799:-1 11/11 None
ZK1151.1a ENSEMBL cdna:known chromosome:CEL140:I:11772417:11800240:-1 gene:ZK1151.1 11/11 A 
ZK1151.1e ENSEMBL cdna:known chromosome:CEL140:I:11772438:11800188:-1 gene:ZK1151.1 11/11 A 
ZK1151.1d ENSEMBL cdna:known chromosome:CEL140:I:11772959:11800188:-1 gene:ZK1151.1 11/11 A 
ZK1151.1f ENSEMBL cdna:known chromosome:CEL140:I:11772959:11800188:-1 gene:ZK1151.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173058 7 4 NM_001026682 175291_at (11), 182228_s_at (11)
NM_001026683 191942_s_at (11), 194232_x_at (11)
NM_001026684 191942_s_at (11), 194232_x_at (11)
NM_001026685 182228_s_at (11)
NM_001026686 175291_at (11), 182228_s_at (11)
NM_001026687 182228_s_at (11)
NM_001026688 191942_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11772889-11779227(-) 97.97 100.0
Public Domain and Genome References
Ensembl ZK1151.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04740 Hypothetical protein ZK1151.1d [Caenorhabditis elegans] emb|CAH04708.1| Hypothetical protein ZK1151.1d [Caenorhabditis elegans] ref|NP_001021856.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 0.0
blast CAH04742 Hypothetical protein ZK1151.1f [Caenorhabditis elegans] emb|CAH04710.1| Hypothetical protein ZK1151.1f [Caenorhabditis elegans] ref|NP_001021858.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 0.0
blast CAH04741 Hypothetical protein ZK1151.1e [Caenorhabditis elegans] emb|CAH04709.1| Hypothetical protein ZK1151.1e [Caenorhabditis elegans] ref|NP_001021857.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.3.1.Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 All alpha proteins; Cytochrome c; Cytochrome c; Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 6.09999990463257
scop a.3.1.Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 All alpha proteins; Cytochrome c; Cytochrome c; Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 5.80000019073486
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.349999994039536
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.340000003576279
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.280000001192093
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.25
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 5.8E-34
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.6E-34
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.45
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.067
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.0011
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.45
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.067
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.0011
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 3.4E-18
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.6E-34
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.45
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.067
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.0011
Sequence
Target Sequence 
>C. ELEGANS:182228_S_AT
acgagccaggactctcggtgcgaatgcgtcagagcacaacatcgatcggagatcgcgcca
gcaagtttctcgaagatccatcccagcttgccgagattcaacaagacttcctttcaagcc
tcgaagccgcccaatttgataccgatgagaaggttattgagcatccacacacccgtcaac
gagtctcagtgcgtgaagcagcggagaccggactgctcgatgtgcaaaccggagaaattg
tgaatccagacaatggtcgccgattctcgatcccaagagccgttcacatgaagcttgtcg
gtggagacgccgccaagaggatcatggaacaattgaatatgccggtcgaagaggtcgcct
atgccacccagacgatcacctcctccacccaccgtgctccatctccagtgtttgccacag
cttctgtaagccaaccaagcggcggagccacaacaacccgcgagttcacccgaaccatta
actggcacgggcaaccatccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAGCCAGGACTCTCGGTGCGAAT 329 91 5468 Antisense
GCGTCAGAGCACAACATCGATCGGA 17 293 5493 Antisense
GCAAGTTTCTCGAAGATCCATCCCA 467 321 5528 Antisense
AAGACTTCCTTTCAAGCCTCGAAGC 629 151 5570 Antisense
TCGAAGCCGCCCAATTTGATACCGA 262 587 5588 Antisense
ACCCGTCAACGAGTCTCAGTGCGTG 126 91 5638 Antisense
AGACCGGACTGCTCGATGTGCAAAC 5 71 5672 Antisense
AGACAATGGTCGCCGATTCTCGATC 219 73 5715 Antisense
GTGTTTGCCACAGCTTCTGTAAGCC 83 487 5875 Antisense
GTAAGCCAACCAAGCGGCGGAGCCA 320 461 5893 Antisense
TTAACTGGCACGGGCAACCATCCGA 64 683 5945 Antisense
Sequence Source Affymetrix Proprietary Database