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[182225_at]

Description F37F2.2 /REP_DB=WormBase Gene ID /WP=CE27426 /TR=O61749 /GB=AAC16997.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 29      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 83      6grp_total > 28      4grp_total > 58      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 530
1 2 3 4 range
A 423
(-0.5)
P 		461.9
(-0)
P 		731.3
(3)
P 		201.3
(-3)
P 		530
B 364
(-1.6)
P 		619
(2.3)
P 		668.3
(3)
P 		273.4
(-3)
P 		395
C 349.4
(-1.4)
P 		707.7
(3)
P 		688.7
(2.8)
P 		218.7
(-3)
P 		489
avr 378.8
(-1.1) 		596.2
(1.7) 		696.1
(3) 		231.1
(-3) 		465

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 418.8
(0.7)
P 		483.8
(3)
P 		456
(2)
P 		383.4
(-0.6)
P 		450.8
(1.8)
P 		314.7
(-3)
P 		169
B 674.2
(3)
P 		466.4
(-1.6)
P 		494.4
(-1)
P 		403.6
(-3)
P 		485.9
(-1.2)
P 		495.6
(-1)
P 		271
C 459
(0.1)
P 		412.7
(-1.2)
P 		344.7
(-3)
P 		357
(-2.7)
P 		406.1
(-1.3)
P 		567.2
(3)
P 		223
avr 517.3
(3) 		454.3
(0.2) 		431.7
(-0.8) 		381.3
(-3) 		447.6
(-0.1) 		459.2
(0.4) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 154
(1.6)
P 		100.3
(-0.4)
P 		191.2
(3)
P 		29.5
(-3)
P 		162
B 116.1
(0.6)
P 		152.9
(2.9)
P 		154.9
(3)
P 		58.3
(-3)
P 		97
C 115.7
(-0.7)
P 		203.5
(1.9)
P 		240
(3)
P 		36.9
(-3)
P 		203
avr 128.6
(0.4) 		152.2
(1.3) 		195.4
(3) 		41.6
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 77.2
(-3)
P 		172.1
(3)
P 		99.3
(-1.6)
P 		97.2
(-1.7)
P 		136
(0.7)
P 		76.6
(-3)
P 		96
B 234.6
(3)
P 		155.3
(-0.7)
P 		120.1
(-2.4)
P 		106.9
(-3)
P 		197.4
(1.3)
P 		184.8
(0.7)
P 		128
C 170.1
(2)
P 		125.9
(-0.3)
P 		87.7
(-2.2)
P 		71.8
(-3)
P 		131.4
(0)
P 		189.9
(3)
P 		118
avr 160.6
(3) 		151.1
(2.2) 		102.4
(-2.1) 		92
(-3) 		154.9
(2.5) 		150.4
(2.1) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182225_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.323
Sequence Type Exemplar sequence
Representative Public ID F37F2.2 NCBI
Target Description F37F2.2 /REP_DB=WormBase Gene ID /WP=CE27426 /TR=O61749 /GB=AAC16997.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058454 NCBI Caenorhabditis elegans F37F2.2 (F37F2.2) mRNA, complete cds. 11/11 None
SNAP00000037821 ENSEMBL cdna:SNAP chromosome:CEL140:I:1442530:1443943:-1 11/11 None
F37F2.2 ENSEMBL cdna:known chromosome:CEL140:I:1441667:1443943:-1 gene:F37F2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037825 2/11 Cross Hyb Matching Probes None
GENEFINDER00000037824 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1441496-1444423(-) 91.87 92.13
Public Domain and Genome References
Gene Title
Ensembl F37F2.2
Entrez Gene 171711 Entrez gene
SwissProt O61749 EMBL-EBI
WormBase CE32185 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260726_AT signal recognition particle 19 kDa protein, putative / SRP19, putative at
DROSOPHILA_2:1638272_AT Signal recognition particle protein 19 dm
DROSGENOME1:143793_AT Signal recognition particle protein 19 dm
HG-U133_PLUS_2:205335_S_AT signal recognition particle 19kDa hs
HG-U133A_2:205335_S_AT signal recognition particle 19kDa hs
HG-U133A:205335_S_AT signal recognition particle 19kDa hs
HG-FOCUS:205335_S_AT signal recognition particle 19kDa hs
HUGENEFL:X12791_AT signal recognition particle 19kDa hs
U133_X3P:G4507212_3P_A_AT signal recognition particle 19kDa hs
HG-U95AV2:35231_AT signal recognition particle 19kDa hs
HG-U95C:60255_I_AT Signal recognition particle 19kDa hs
HG-U95C:60256_R_AT Signal recognition particle 19kDa hs
HU35KSUBD:RC_T86429_AT Signal recognition particle 19kDa hs
MG-U74AV2:160343_AT signal recognition particle 19 mm
MOE430A:1450891_AT signal recognition particle 19 mm
MOUSE430A_2:1450891_AT signal recognition particle 19 mm
MOUSE430_2:1450891_AT signal recognition particle 19 mm
MG-U74CV2:133486_AT Signal recognition particle 19 (Srp19), mRNA mm
MU19KSUBC:TC37255_AT Signal recognition particle 19 (Srp19), mRNA mm
MU11KSUBB:W08076_S_AT Signal recognition particle 19 (Srp19), mRNA mm
RG-U34C:RC_AI101527_AT signal recognition particle 19 (predicted) rn
RAE230A:1388974_AT signal recognition particle 19 (predicted) rn
RAT230_2:1388974_AT signal recognition particle 19 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6605 protein targeting inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5786 signal recognition particle (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
8312 7S RNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC16997 Hypothetical protein F37F2.2 [Caenorhabditis elegans] ref|NP_490855.2| F37F2.2 [Caenorhabditis elegans] sp|O61749|SRP19_CAEEL Probable signal recognition particle 19 kDa protein (SRP19) 6.0E-67
blast AAC16997 Hypothetical protein F37F2.2 [Caenorhabditis elegans] ref|NP_490855.2| F37F2.2 [Caenorhabditis elegans] sp|O61749|SRP19_CAEEL Probable signal recognition particle 19 kDa protein (SRP19) 1.0E-64
blast CAE74528 Hypothetical protein CBG22282 [Caenorhabditis briggsae] 1.0E-58
blast CAE74528 Hypothetical protein CBG22282 [Caenorhabditis briggsae] 2.0E-58
blast NP_079803 signal recognition particle 19 [Mus musculus] dbj|BAB26271.1| unnamed protein product [Mus musculus] sp|Q9D7A6|SRP19_MOUSE Signal recognition particle 19 kDa protein (SRP19) 1.0E-24
blast NP_079803 signal recognition particle 19 [Mus musculus] dbj|BAB26271.1| unnamed protein product [Mus musculus] sp|Q9D7A6|SRP19_MOUSE Signal recognition particle 19 kDa protein (SRP19) 2.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR002778 EMBL-EBI Ribonucleoprotein complex SRP, Srp19 component 4.8E-27
Sequence
Target Sequence 
>C. ELEGANS:182225_AT
gtcggctttaatccgcttttggagcgaacaaagtgctatccacgtgacggagagcgggat
tttgaagttcagggccgtgtacgggttcaattgaagaatgacgatggaactgccaagcat
gagcagaaaactagagacgaaatcttcaaaatggtggctgaaatgattccaaagctgaaa
actcgtcaaccaggctacacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGCTTTAATCCGCTTTTGGAGC 502 471 163 Antisense
GCTTTAATCCGCTTTTGGAGCGAAC 428 303 167 Antisense
GGAGCGAACAAAGTGCTATCCACGT 423 521 183 Antisense
GTGCTATCCACGTGACGGAGAGCGG 285 479 195 Antisense
GACGGAGAGCGGGATTTTGAAGTTC 468 367 208 Antisense
TTGAAGTTCAGGGCCGTGTACGGGT 322 651 224 Antisense
GGCCGTGTACGGGTTCAATTGAAGA 444 285 235 Antisense
GACGATGGAACTGCCAAGCATGAGC 395 379 262 Antisense
GCATGAGCAGAAAACTAGAGACGAA 585 309 279 Antisense
ATGATTCCAAAGCTGAAAACTCGTC 21 1 325 Antisense
AAAACTCGTCAACCAGGCTACACAG 48 131 340 Antisense
Sequence Source Affymetrix Proprietary Database