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[182224_at]

Description F17A2.11 /REP_DB=WormBase Gene ID /WP=CE15864 /TR=Q19507 /GB=CAA92162.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 11      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 37.4
(-2.6)
A 		32.9
(-3)
A 		53.9
(-0.9)
A 		93.7
(3)
P 		61
B 78.1
(3)
P 		58.2
(-1.5)
A 		51.5
(-3)
M 		52.7
(-2.7)
P 		27
C 41.1
(-2.8)
A 		65.3
(0.4)
M 		39.5
(-3)
A 		85
(3)
P 		46
avr 52.2
(-2.2) 		52.1
(-2.2) 		48.3
(-3) 		77.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 95
(3)
A 		37.7
(-2.1)
A 		56.8
(-0.4)
P 		27.5
(-3)
A 		41
(-1.8)
A 		32.1
(-2.6)
A 		68
B 27.1
(-2.6)
A 		37.2
(1.2)
A 		36.8
(1)
A 		42.1
(3)
A 		26.1
(-3)
A 		33.2
(-0.3)
A 		16
C 23.7
(-0.6)
A 		51.6
(3)
A 		5.3
(-3)
A 		50.2
(2.8)
A 		28.5
(0)
A 		40.9
(1.6)
A 		46
avr 48.6
(3) 		42.2
(0.7) 		33
(-2.6) 		39.9
(-0.1) 		31.9
(-3) 		35.4
(-1.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 13.6
(2.6)
A 		7.1
(-3)
A 		14.1
(3)
A 		13.7
(2.7)
P 		7
B 24.9
(3)
P 		14.4
(-1.6)
A 		11.9
(-2.7)
M 		11.2
(-3)
P 		14
C 13.6
(-3)
A 		18.8
(3)
M 		13.8
(-2.8)
A 		14.3
(-2.2)
P 		5
avr 17.4
(3) 		13.4
(-2.6) 		13.3
(-2.7) 		13.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 17.5
(3)
A 		13.4
(0.7)
A 		12.4
(0.1)
P 		7
(-3)
A 		12.4
(0.1)
A 		7.8
(-2.5)
A 		11
B 9.4
(-2.1)
A 		12.4
(3)
A 		8.9
(-3)
A 		11.1
(0.8)
A 		10.6
(-0.1)
A 		12.4
(3)
A 		4
C 8.8
(0.1)
A 		15.8
(3)
A 		1.3
(-3)
A 		10.1
(0.6)
A 		9.2
(0.3)
A 		13.7
(2.1)
A 		15
avr 11.9
(1.1) 		13.9
(3) 		7.5
(-3) 		9.4
(-1.2) 		10.7
(-0) 		11.3
(0.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182224_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17153
Sequence Type Exemplar sequence
Representative Public ID F17A2.11 NCBI
Target Description F17A2.11 /REP_DB=WormBase Gene ID /WP=CE15864 /TR=Q19507 /GB=CAA92162.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077665(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077665 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-47) (srd-47) mRNA, complete cds. 11/11 None
GENEFINDER00000014133 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12333773:12335211:1 11/11 None
F17A2.11 ENSEMBL cdna:known chromosome:CEL140:X:12333563:12335211:1 gene:F17A2.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12333562-12335211(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-47
Ensembl F17A2.11
Entrez Gene 184607 Entrez gene
SwissProt Q19507 EMBL-EBI
WormBase CE15864 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92162 Hypothetical protein F17A2.11 [Caenorhabditis elegans] ref|NP_510066.1| Serpentine Receptor, class D (delta) family member (srd-47) [Caenorhabditis elegans] sp|Q19507|SRD47_CAEEL Serpentine receptor class delta-47 (Protein srd-47) 1.0E-160
blast CAA92162 Hypothetical protein F17A2.11 [Caenorhabditis elegans] ref|NP_510066.1| Serpentine Receptor, class D (delta) family member (srd-47) [Caenorhabditis elegans] sp|Q19507|SRD47_CAEEL Serpentine receptor class delta-47 (Protein srd-47) 1.0E-129
blast CAA92160 Hypothetical protein F17A2.9 [Caenorhabditis elegans] ref|NP_510067.1| Serpentine Receptor, class D (delta) family member (srd-48) [Caenorhabditis elegans] sp|O17822|SRD48_CAEEL Serpentine receptor class delta-48 (Protein srd-48) 2.0E-78
blast CAA92161 Hypothetical protein F17A2.10 [Caenorhabditis elegans] ref|NP_510065.1| Serpentine Receptor, class D (delta) family member (srd-46) [Caenorhabditis elegans] sp|Q19508|SRD46_CAEEL Serpentine receptor class delta-46 (Protein srd-46) 6.0E-72
blast CAA92160 Hypothetical protein F17A2.9 [Caenorhabditis elegans] ref|NP_510067.1| Serpentine Receptor, class D (delta) family member (srd-48) [Caenorhabditis elegans] sp|O17822|SRD48_CAEEL Serpentine receptor class delta-48 (Protein srd-48) 1.0E-65
blast CAA92161 Hypothetical protein F17A2.10 [Caenorhabditis elegans] ref|NP_510065.1| Serpentine Receptor, class D (delta) family member (srd-46) [Caenorhabditis elegans] sp|Q19508|SRD46_CAEEL Serpentine receptor class delta-46 (Protein srd-46) 7.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510066.1 7 10-29,42-64,84-106,127-149,176-198,235-257,267-289
F17A2.11 7 10-29,42-64,84-106,127-149,176-198,235-257,267-289
GENEFINDER00000014133 5 15-37,58-80,106-128,165-187,197-219
Sequence
Target Sequence 
>C. ELEGANS:182224_AT
gtgtcgttacacattcattgttgccagaagttagatatcttttcgaggtaatcaattcca
acgtgactgaccattcagttattggttatataactttgcaaactgttccaagttatttga
taatcagcattgttttcggatcggttttcctgcttccaccgatgggattgtatacacgga
gaaaaatcattttccacatcaactccggtagggatactacttcacaactcaaaaaacatc
aacggaaaacatttataaatggtttaacactccaagcttgccttcctcttgtgagcctgt
gcccaatttttgtgtgctatgtgatagtgattggaactaaatcagaattgcttttcgagc
agtattgtatttctgtgctagtgctactccccacgtttttcgacccgtacatcacgttat
actcggtggctccgtaccgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCGTTACACATTCATTGTTGCC 114 487 452 Antisense
TCAATTCCAACGTGACTGACCATTC 393 633 503 Antisense
TGTTTTCGGATCGGTTTTCCTGCTT 540 561 582 Antisense
TCCTGCTTCCACCGATGGGATTGTA 135 593 599 Antisense
ATCATTTTCCACATCAACTCCGGTA 122 29 637 Antisense
GTAGGGATACTACTTCACAACTCAA 687 455 659 Antisense
TGGTTTAACACTCCAAGCTTGCCTT 310 549 711 Antisense
GCCTGTGCCCAATTTTTGTGTGCTA 304 283 746 Antisense
GTATTGTATTTCTGTGCTAGTGCTA 67 453 813 Antisense
TCGACCCGTACATCACGTTATACTC 605 599 851 Antisense
TATACTCGGTGGCTCCGTACCGAAA 100 659 869 Antisense
Sequence Source Affymetrix Proprietary Database