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[182222_at]

Description C53C9.3 /REP_DB=WormBase Gene ID /WP=CE08962 /TR=Q09937 /GB=AAB52604.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 21      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 144.3
(1.9)
P 		78.8
(-3)
A 		95.5
(-1.8)
A 		159.6
(3)
P 		81
B 138.8
(3)
P 		98.7
(-0)
A 		59.3
(-3)
A 		119.8
(1.6)
P 		80
C 120.9
(-1)
P 		132.6
(-0.2)
A 		89
(-3)
A 		182.8
(3)
P 		94
avr 134.7
(1.4) 		103.4
(-1.2) 		81.3
(-3) 		154.1
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 127.2
(3)
A 		94.6
(0.4)
A 		59.9
(-2.4)
A 		84
(-0.4)
A 		54.9
(-2.8)
A 		51.8
(-3)
A 		75
B 112.1
(3)
P 		83
(0.5)
P 		42.9
(-3)
P 		59.7
(-1.5)
A 		64.8
(-1.1)
A 		73.5
(-0.3)
A 		69
C 102.4
(3)
P 		101.1
(2.9)
P 		74.7
(0.9)
A 		21.8
(-3)
A 		69.5
(0.6)
A 		77.9
(1.2)
P 		81
avr 113.9
(3) 		92.9
(0.9) 		59.2
(-2.6) 		55.2
(-3) 		63.1
(-2.2) 		67.7
(-1.7) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 52.5
(3)
P 		17.1
(-3)
A 		25
(-1.7)
A 		23.4
(-1.9)
P 		35
B 44.3
(3)
P 		24.4
(-0.9)
A 		13.7
(-3)
A 		25.5
(-0.7)
P 		31
C 40
(3)
P 		38.1
(1.8)
A 		31
(-2.9)
A 		30.8
(-3)
P 		9
avr 45.6
(3) 		26.5
(-2.1) 		23.2
(-3) 		26.6
(-2.1) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 23.5
(0.1)
A 		33.6
(3)
A 		13
(-2.9)
A 		21.3
(-0.5)
A 		16.6
(-1.9)
A 		12.6
(-3)
A 		21
B 39
(3)
P 		27.6
(0.6)
P 		10.4
(-3)
P 		15.8
(-1.9)
A 		26.3
(0.3)
A 		27.4
(0.6)
A 		29
C 38
(3)
P 		30.8
(1.7)
P 		19
(-0.4)
A 		4.4
(-3)
A 		22.5
(0.2)
A 		26.1
(0.9)
P 		34
avr 33.5
(3) 		30.7
(2.1) 		14.1
(-2.9) 		13.8
(-3) 		21.8
(-0.6) 		22
(-0.5) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182222_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16886
Sequence Type Exemplar sequence
Representative Public ID C53C9.3 NCBI
Target Description C53C9.3 /REP_DB=WormBase Gene ID /WP=CE08962 /TR=Q09937 /GB=AAB52604.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029318(11), NM_001029319(11), NM_001029320(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029318 NCBI Caenorhabditis elegans K (potassium) Voltage-gated Sensory channel subunit family member (kvs-1) (kvs-1) mRNA, complete cds. 11/11 None
NM_001029319 NCBI Caenorhabditis elegans K (potassium) Voltage-gated Sensory channel subunit family member (kvs-1) (kvs-1) mRNA, complete cds. 11/11 None
NM_001029320 NCBI Caenorhabditis elegans K (potassium) Voltage-gated Sensory channel subunit family member (kvs-1) (kvs-1) mRNA, complete cds. 11/11 None
GENEFINDER00000002526 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7686836:7696662:-1 11/11 None
SNAP00000002524 ENSEMBL cdna:SNAP chromosome:CEL140:X:7691671:7692876:-1 10/11 None
C53C9.3a ENSEMBL cdna:known chromosome:CEL140:X:7690529:7707025:-1 gene:C53C9.3 11/11 None
C53C9.3b ENSEMBL cdna:known chromosome:CEL140:X:7690872:7696643:-1 gene:C53C9.3 11/11 None
C53C9.3c ENSEMBL cdna:known chromosome:CEL140:X:7691524:7707025:-1 gene:C53C9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7691669-7696642(-) 100.0 100.0
Public Domain and Genome References
Ensembl C53C9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52604 K (potassium) voltage-gated sensory channel subunit protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024489.1| K (potassium) Voltage-gated Sensory channel subunit family member (kvs-1) [Caenorhabditis elegans] 0.0
blast AAO65852 KVS-1 [Caenorhabditis elegans] 0.0
blast AAR25654 K (potassium) voltage-gated sensory channel subunit protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024490.1| K (potassium) Voltage-gated Sensory channel subunit family member (kvs-1) [Caenorhabditis elegans] 0.0
blast AAR30209 K (potassium) voltage-gated sensory channel subunit protein 1, isoform c [Caenorhabditis elegans] ref|NP_001024491.1| K (potassium) Voltage-gated Sensory channel subunit family member (kvs-1) [Caenorhabditis elegans] 0.0
blast AAN75511 KVS-2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005821 EMBL-EBI Ion transport protein 3.3E-46
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.6E-23
Pfam IPR005821 EMBL-EBI Ion transport protein 3.3E-46
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.6E-23
Pfam IPR005821 EMBL-EBI Ion transport protein 1.8E-17
Pfam IPR005821 EMBL-EBI Ion transport protein 1.1E-22
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 2.9E-20
Pfam IPR000557 EMBL-EBI Calponin repeat 1.5E-6
Pfam IPR000557 EMBL-EBI Calponin repeat 0.0037
Pfam IPR000557 EMBL-EBI Calponin repeat 2.1
Pfam IPR000557 EMBL-EBI Calponin repeat 8.9E-4
Pfam IPR000557 EMBL-EBI Calponin repeat 0.46
Pfam IPR000557 EMBL-EBI Calponin repeat 1.7E-9
Pfam IPR005821 EMBL-EBI Ion transport protein 1.0E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024489.1 6 215-237,275-297,304-326,380-402,409-431,441-463
NP_001024490.1 6 220-242,280-302,309-331,385-407,414-436,446-468
NP_001024491.1 6 215-237,275-297,304-326,380-402,409-431,441-463
C53C9.3a 6 215-237,275-297,304-326,380-402,409-431,441-463
C53C9.3b 6 220-242,280-302,309-331,385-407,414-436,446-468
C53C9.3c 6 215-237,275-297,304-326,380-402,409-431,441-463
GENEFINDER00000002526 6 235-257,302-324,334-356,440-462,472-494,501-523
SNAP00000002524 4 7-29,72-94,101-123,133-155
Sequence
Target Sequence 
>C. ELEGANS:182222_AT
gggagccacatccgatttttgggtatgtggagacagtgtgtatcatctggtttactgtag
aattcatcgtacggttagcagttacaccaaatagattccaatttttggtgggaatcatga
atattgtcgatatgatcgctattattccattctatttggaactcgggttggcgttgtttg
gaattgatgtcgctagtctgagtgacattaaaggagcattattagttgttagagtgctcc
gtgtgcttcgtgttgtgagaattttgaaacttggaagatactcatctggtatgcgaacat
tcgctttgacactgaaaagttccgctcgccagctgggaatgatgggaatggtcctgtcaa
ctggtgtcgtattcttctcaacacttttatatttcgtcgagaaagacgaaaaagacacgc
cgttcacttcgattccagctgctttttggtgggcaatcgtcacgatgacaactgttggat
atggagattatgttcctgtgacagttcctggaaaactgattgcaagtggagcaattatca
gtggagtattggtacttgctcttcctatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAGCCACATCCGATTTTTGGGTA 133 495 851 Antisense
TTGGAACTCGGGTTGGCGTTGTTTG 509 707 1006 Antisense
GGAATTGATGTCGCTAGTCTGAGTG 121 535 1030 Antisense
AGTTGTTAGAGTGCTCCGTGTGCTT 393 65 1074 Antisense
TTGACACTGAAAAGTTCCGCTCGCC 274 705 1156 Antisense
TCCGCTCGCCAGCTGGGAATGATGG 9 595 1171 Antisense
TCCTGTCAACTGGTGTCGTATTCTT 125 593 1202 Antisense
AAAAGACACGCCGTTCACTTCGATT 214 133 1260 Antisense
GATTCCAGCTGCTTTTTGGTGGGCA 402 433 1281 Antisense
TATGTTCCTGTGACAGTTCCTGGAA 545 655 1339 Antisense
AGTATTGGTACTTGCTCTTCCTATC 235 63 1395 Antisense
Sequence Source Affymetrix Proprietary Database