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[182220_at]

Description C06E2.2 /REP_DB=WormBase Gene ID /WP=CE03945 /TR=Q17722 /GB=AAA80417.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 1.3
(-3)
A 		1.8
(-2.9)
A 		2.7
(-2.7)
A 		28.2
(3)
A 		27
B 1.4
(-2.6)
A 		3
(3)
A 		2.3
(0.5)
A 		1.3
(-3)
A 		2
C 3.7
(-0.5)
A 		1.3
(-3)
A 		3
(-1.2)
A 		7
(3)
A 		6
avr 2.1
(-2.9) 		2
(-3) 		2.7
(-2.6) 		12.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 27.6
(3)
A 		6.1
(-1.9)
A 		2.2
(-2.8)
A 		1.4
(-3)
A 		3
(-2.6)
A 		2.6
(-2.7)
A 		26
B 1.5
(-2.4)
A 		1.6
(-2.4)
A 		1
(-2.8)
A 		1.7
(-2.3)
A 		9.4
(3)
A 		0.7
(-3)
A 		9
C 1.7
(-1.9)
A 		4
(3)
A 		1.5
(-2.4)
A 		2.2
(-0.9)
A 		1.2
(-3)
A 		1.7
(-1.9)
A 		3
avr 10.3
(3) 		3.9
(-1.4) 		1.6
(-3) 		1.8
(-2.9) 		4.5
(-1) 		1.7
(-2.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.5
(-2.8)
A 		0.4
(-3)
A 		0.7
(-2.5)
A 		4.1
(3)
A 		4
B 0.4
(-1.5)
A 		0.7
(3)
A 		0.5
(0)
A 		0.3
(-3)
A 		0
C 1.2
(3)
A 		0.4
(-3)
A 		1
(1.5)
A 		1.2
(3)
A 		1
avr 0.7
(-2.1) 		0.5
(-3) 		0.7
(-2.1) 		1.9
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 5.1
(3)
A 		2.2
(-0.7)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		0.9
(-2.4)
A 		0.6
(-2.7)
A 		5
B 0.5
(-2.5)
A 		0.5
(-2.5)
A 		0.2
(-3)
A 		0.4
(-2.7)
A 		3.8
(3)
A 		0.3
(-2.8)
A 		4
C 0.6
(-1.5)
A 		1.2
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.6
(-1.5)
A 		1
avr 2.1
(3) 		1.3
(0.2) 		0.4
(-3) 		0.4
(-3) 		1.7
(1.6) 		0.5
(-2.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182220_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16744
Sequence Type Exemplar sequence
Representative Public ID C06E2.2 NCBI
Target Description C06E2.2 /REP_DB=WormBase Gene ID /WP=CE03945 /TR=Q17722 /GB=AAA80417.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077103(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077103 NCBI Caenorhabditis elegans C06E2.2 (C06E2.2) mRNA, complete cds. 11/11 None
C06E2.2 ENSEMBL cdna:known chromosome:CEL140:X:8879587:8880343:1 gene:C06E2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8879585-8880342(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E2.2
Entrez Gene 182320 Entrez gene
SwissProt Q17722 EMBL-EBI
WormBase CE03945 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80417 Hypothetical protein C06E2.2 [Caenorhabditis elegans] ref|NP_509504.1| C06E2.2 [Caenorhabditis elegans] 3.0E-45
Sequence
Target Sequence 
>C. ELEGANS:182220_AT
ctacactgcctccggttatattgactgatacctacaactgtcgctttgtaattcaagagg
aaatcgatgttgagtcacaaatgtcagacggaaccaaatcggaaacgctcaccaaattgt
tctttcacttagcgtgtgctgacaatatcatcaaaatcggagaatcagcgtatacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACACTGCCTCCGGTTATATTGAC 407 227 56 Antisense
TGCCTCCGGTTATATTGACTGATAC 79 585 62 Antisense
GACTGATACCTACAACTGTCGCTTT 551 375 78 Antisense
AACTGTCGCTTTGTAATTCAAGAGG 554 141 91 Antisense
GAGGAAATCGATGTTGAGTCACAAA 387 403 112 Antisense
GAGTCACAAATGTCAGACGGAACCA 492 399 127 Antisense
GGAACCAAATCGGAAACGCTCACCA 490 527 145 Antisense
AACGCTCACCAAATTGTTCTTTCAC 23 147 159 Antisense
GTTCTTTCACTTAGCGTGTGCTGAC 590 443 174 Antisense
TAGCGTGTGCTGACAATATCATCAA 591 651 185 Antisense
AAAATCGGAGAATCAGCGTATACAA 468 133 208 Antisense
Sequence Source Affymetrix Proprietary Database