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[182219_at]

Description K12D12.5 /REP_DB=WormBase Gene ID /WP=CE06185 /TR=Q21439 /GB=CAA93880.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 6.6
(-3)
A 		12.8
(-2.3)
A 		13.9
(-2.2)
A 		58.2
(3)
A 		52
B 11.6
(2.1)
A 		12.8
(3)
A 		5.1
(-3)
A 		12.5
(2.8)
A 		8
C 12.9
(-2.5)
A 		10.2
(-2.7)
A 		6
(-3)
A 		88.7
(3)
A 		83
avr 10.4
(-2.7) 		11.9
(-2.5) 		8.3
(-3) 		53.1
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 5.1
(-3)
A 		5.9
(-2.4)
A 		10.3
(0.9)
A 		7.1
(-1.5)
A 		7.8
(-1)
A 		13.2
(3)
A 		8
B 7.9
(-2.9)
A 		9.9
(-2.3)
A 		13.2
(-1.2)
A 		11.7
(-1.7)
A 		7.6
(-3)
A 		26.6
(3)
A 		19
C 7.2
(-3)
A 		14.5
(0.7)
A 		8.6
(-2.3)
A 		19.1
(3)
A 		14.2
(0.5)
A 		7.7
(-2.7)
A 		12
avr 6.7
(-3) 		10.1
(-0.8) 		10.7
(-0.4) 		12.6
(0.9) 		9.9
(-0.9) 		15.8
(3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.4
(-3)
A 		2.8
(-2.6)
A 		3.6
(-1.8)
A 		8.5
(3)
A 		6
B 3.7
(3)
A 		3.2
(1.8)
A 		1.2
(-3)
A 		2.7
(0.6)
A 		3
C 4.3
(-2)
A 		2.9
(-2.6)
A 		2.1
(-3)
A 		15
(3)
A 		13
avr 3.5
(-1.9) 		3
(-2.3) 		2.3
(-3) 		8.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.9
(-3)
A 		2.1
(0.1)
A 		2.2
(0.4)
A 		1.8
(-0.7)
A 		2.4
(0.9)
A 		3.2
(3)
A 		2
B 2.8
(-3)
A 		3.3
(-2.6)
A 		3.2
(-2.7)
A 		3.1
(-2.7)
A 		3.1
(-2.7)
A 		9.9
(3)
A 		7
C 2.7
(-1.8)
A 		4.4
(2.5)
A 		2.2
(-3)
A 		3.8
(1)
A 		4.6
(3)
A 		2.6
(-2)
A 		2
avr 2.1
(-3) 		3.3
(-0.7) 		2.5
(-2.2) 		2.9
(-1.5) 		3.4
(-0.5) 		5.2
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182219_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2742
Sequence Type Exemplar sequence
Representative Public ID K12D12.5 NCBI
Target Description K12D12.5 /REP_DB=WormBase Gene ID /WP=CE06185 /TR=Q21439 /GB=CAA93880.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064131 NCBI Caenorhabditis elegans K12D12.5 (K12D12.5) mRNA, complete cds. 11/11 None
SNAP00000036842 ENSEMBL cdna:SNAP chromosome:CEL140:II:11862675:11863207:1 9/11 None
K12D12.5 ENSEMBL cdna:known chromosome:CEL140:II:11860943:11863207:1 gene:K12D12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036847 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11860939-11863204(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12D12.5
Entrez Gene 174822 Entrez gene
SwissProt Q21439 EMBL-EBI
WormBase CE06185 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93880 Hypothetical protein K12D12.5 [Caenorhabditis elegans] emb|CAA88868.1| Hypothetical protein K12D12.5 [Caenorhabditis elegans] ref|NP_496532.1| K12D12.5 [Caenorhabditis elegans] 0.0
blast CAA93880 Hypothetical protein K12D12.5 [Caenorhabditis elegans] emb|CAA88868.1| Hypothetical protein K12D12.5 [Caenorhabditis elegans] ref|NP_496532.1| K12D12.5 [Caenorhabditis elegans] 2.0E-72
Sequence
Target Sequence 
>C. ELEGANS:182219_AT
tgctcaaacctttttcgcgggaagaaatgaatctatccagaagcagcgttccattgaaga
catccagctcgaagatcccatagagaacaacatagttgaagcggaatctgttaatccaga
atccagcaatcaaattcaagttgtctatgttggaggtgcatgccgaggaagaggatatgc
gaacgctttagctgtatactccgtcgtttggccaataggtgaatatggatgctcccaagg
cccggtcactggcattgtcaacaacattcgtgcaaagctggctgccgtgaaaagtgcgct
gcaacaggctgaacaattgggaatcgcctcgctcatcatcaggacaaacgatcaaatggt
ccacgacaccttgattcttcagaattccccaattggaaacattgatttgatggatgacat
tgaaagttacaaatctcgaatgaggttcgttgcataccagctaaccaccggagactatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCAAACCTTTTTCGCGGGAAGA 14 555 1422 Antisense
GTTCCATTGAAGACATCCAGCTCGA 480 441 1469 Antisense
ACGCTTTAGCTGTATACTCCGTCGT 335 91 1604 Antisense
ACTCCGTCGTTTGGCCAATAGGTGA 381 97 1619 Antisense
GTGAATATGGATGCTCCCAAGGCCC 113 481 1640 Antisense
ACATTCGTGCAAAGCTGGCTGCCGT 97 105 1685 Antisense
CTGGCTGCCGTGAAAAGTGCGCTGC 368 241 1699 Antisense
GCTGAACAATTGGGAATCGCCTCGC 577 295 1729 Antisense
AAATGGTCCACGACACCTTGATTCT 255 121 1775 Antisense
TGAGGTTCGTTGCATACCAGCTAAC 649 563 1862 Antisense
ACCAGCTAACCACCGGAGACTATGC 119 87 1877 Antisense
Sequence Source Affymetrix Proprietary Database