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[182217_at]

Description F29G9.1 /REP_DB=WormBase Gene ID /WP=CE09795 /TR=O16373 /GB=AAB65903.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 40      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.2
(-3)
A 		2.5
(-1.7)
A 		7.1
(3)
A 		3
(-1.2)
A 		6
B 5.5
(3)
A 		1.7
(-3)
A 		3.1
(-0.8)
A 		5
(2.2)
A 		4
C 1.1
(-2.6)
A 		4.2
(3)
A 		0.9
(-3)
A 		1.5
(-1.9)
A 		3
avr 2.6
(-3) 		2.8
(-1.9) 		3.7
(3) 		3.2
(0.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.7
(-2.7)
A 		2.4
(-2.8)
A 		7.4
(-1.4)
A 		1.6
(-3)
A 		2.2
(-2.8)
A 		22.8
(3)
A 		21
B 17.4
(3)
A 		1.3
(-3)
A 		4.7
(-1.7)
A 		1.7
(-2.9)
A 		1.5
(-2.9)
A 		1.9
(-2.8)
A 		16
C 1.7
(-1.5)
A 		1.9
(-1.1)
A 		4.3
(3)
A 		2.1
(-0.8)
A 		2.1
(-0.8)
A 		0.8
(-3)
A 		4
avr 7.3
(1.9) 		1.9
(-2.9) 		5.5
(0.3) 		1.8
(-3) 		1.9
(-2.9) 		8.5
(3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.4
(-3)
A 		0.5
(-2.6)
A 		1.8
(3)
A 		0.4
(-3)
A 		1
B 1.7
(3)
A 		0.4
(-3)
A 		0.7
(-1.6)
A 		1.1
(0.2)
A 		1
C 0.4
(-2.3)
A 		1.2
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		1
avr 0.8
(1) 		0.7
(-1) 		0.9
(3) 		0.6
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.5
(-2.9)
A 		0.9
(-2.4)
A 		1.6
(-1.6)
A 		0.4
(-3)
A 		0.7
(-2.7)
A 		5.6
(3)
A 		5
B 6.1
(3)
A 		0.4
(-3)
A 		1.1
(-2.3)
A 		0.4
(-3)
A 		0.6
(-2.8)
A 		0.7
(-2.7)
A 		6
C 0.6
(-0.8)
A 		0.6
(-0.8)
A 		1.1
(3)
A 		0.4
(-2.3)
A 		0.7
(-0)
A 		0.3
(-3)
A 		1
avr 2.4
(3) 		0.6
(-2.4) 		1.3
(-0.3) 		0.4
(-3) 		0.7
(-2.1) 		2.2
(2.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11987
Sequence Type Exemplar sequence
Representative Public ID F29G9.1 NCBI
Target Description F29G9.1 /REP_DB=WormBase Gene ID /WP=CE09795 /TR=O16373 /GB=AAB65903.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072162(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072162 NCBI Caenorhabditis elegans F29G9.1 (F29G9.1) mRNA, complete cds. 10/11 A 
SNAP00000000279 ENSEMBL cdna:SNAP chromosome:CEL140:V:6042092:6043196:1 10/11 None
F29G9.1 ENSEMBL cdna:known chromosome:CEL140:V:6042092:6043176:1 gene:F29G9.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016074 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016111 2/11 Cross Hyb Matching Probes None
SNAP00000016075 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6042119-6043196(+) 67.41 100.0
Public Domain and Genome References
Gene Title
Ensembl F29G9.1
Entrez Gene 185122 Entrez gene
SwissProt O16373 EMBL-EBI
WormBase CE35297 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65903 Hypothetical protein F29G9.1 [Caenorhabditis elegans] ref|NP_504563.2| F29G9.1 [Caenorhabditis elegans] 3.0E-51
blast AAB65903 Hypothetical protein F29G9.1 [Caenorhabditis elegans] ref|NP_504563.2| F29G9.1 [Caenorhabditis elegans] 4.0E-36
blast AAR85896 Hypothetical protein Y46H3C.7 [Caenorhabditis elegans] ref|NP_001024248.1| Y46H3C.7 [Caenorhabditis elegans] 4.0E-35
blast AAR85896 Hypothetical protein Y46H3C.7 [Caenorhabditis elegans] ref|NP_001024248.1| Y46H3C.7 [Caenorhabditis elegans] 5.0E-34
blast CAB60327 Hypothetical protein Y24F12A.4 [Caenorhabditis elegans] ref|NP_502190.1| Y24F12A.4 [Caenorhabditis elegans] 3.0E-24
blast AAY55893 Hypothetical protein Y51H7C.15 [Caenorhabditis elegans] ref|NP_001022460.1| Y51H7C.15 [Caenorhabditis elegans] 9.0E-17
Sequence
Target Sequence 
>C. ELEGANS:182217_AT
accaagcaacagcaaggatcagcaaaaggacgaccaacagaagaagaaggaacgaacgac
gacggaaagaagacatggacaaaaggtggcgatagtatggagttgaattggaacgagatc
tcactcaaaagatctcgagcgacgatggatcgggatggatcggggtggaacgatagattc
gaatgtgacaatcgggatcggcggacgggatggattcgggatggattcgggatggattcg
ggatggatcgggatggatcgggatggattgggatggattgggatggatcgggatggatcg
gaatgggtcgcgatggatcgggatggatcgggatgggtcgggaaggatcgggatggctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAAGCAACAGCAAGGATCAGCAA 609 83 163 Antisense
AAGGATCAGCAAAAGGACGACCAAC 419 159 176 Antisense
GGGATGGATCGGGGTGGAACGATAG 624 495 314 Antisense
GTGGAACGATAGATTCGAATGTGAC 435 489 327 Antisense
GAATGTGACAATCGGGATCGGCGGA 150 333 343 Antisense
ACAATCGGGATCGGCGGACGGGATG 615 109 350 Antisense
GATCGGCGGACGGGATGGATTCGGG 498 415 358 Antisense
GATGGATCGGAATGGGTCGCGATGG 573 407 454 Antisense
GAATGGGTCGCGATGGATCGGGATG 433 331 463 Antisense
ATCGGGATGGGTCGGGAAGGATCGG 72 3 489 Antisense
GGTCGGGAAGGATCGGGATGGCTCG 52 503 498 Antisense
Sequence Source Affymetrix Proprietary Database