[Home] | [Total List]

[182216_at]

Description T27A1.3 /REP_DB=WormBase Gene ID /WP=CE14209 /TR=O17272 /GB=AAB71044.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 23.5
(-1.4)
A 		63.9
(3)
A 		47.3
(1.2)
A 		8.3
(-3)
A 		56
B 32.5
(-0.8)
A 		53.4
(3)
A 		23.3
(-2.5)
A 		20.4
(-3)
A 		33
C 6.3
(-2.7)
A 		6.9
(-2.6)
A 		3.6
(-3)
A 		50.4
(3)
A 		47
avr 20.8
(-3) 		41.4
(3) 		24.7
(-1.9) 		26.4
(-1.4) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 41.6
(3)
A 		29.4
(1)
A 		37.6
(2.3)
A 		20.8
(-0.4)
A 		5.2
(-3)
A 		41.1
(2.9)
A 		36
B 18.6
(-1.1)
A 		42.7
(3)
A 		19.5
(-1)
A 		7.7
(-3)
A 		7.9
(-3)
A 		30.1
(0.8)
A 		35
C 34.8
(3)
A 		32.1
(2.5)
A 		4
(-3)
A 		17.4
(-0.4)
A 		22.2
(0.5)
A 		10.1
(-1.8)
A 		31
avr 31.7
(2.2) 		34.7
(3) 		20.4
(-0.7) 		15.3
(-2.1) 		11.8
(-3) 		27.1
(1) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.6
(0.5)
A 		13.9
(3)
A 		12.4
(2.3)
A 		1.2
(-3)
A 		13
B 10.4
(1.1)
A 		13.2
(3)
A 		5.4
(-2.3)
A 		4.4
(-3)
A 		9
C 2.1
(-2.3)
A 		2
(-2.4)
A 		1.3
(-3)
A 		8.5
(3)
A 		7
avr 7
(-0.2) 		9.7
(3) 		6.4
(-1) 		4.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 7.7
(1.1)
A 		10.5
(3)
A 		8.2
(1.4)
A 		5.3
(-0.5)
A 		1.6
(-3)
A 		10
(2.7)
A 		9
B 6.5
(-0.8)
A 		14.2
(3)
A 		4.7
(-1.7)
A 		2
(-3)
A 		3.2
(-2.4)
A 		11.2
(1.5)
A 		12
C 12.9
(3)
A 		9.8
(1.4)
A 		1
(-3)
A 		3.5
(-1.7)
A 		7.2
(0.1)
A 		3.4
(-1.8)
A 		12
avr 9
(1.1) 		11.5
(3) 		4.6
(-2.2) 		3.6
(-3) 		4
(-2.7) 		8.2
(0.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182216_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5728
Sequence Type Exemplar sequence
Representative Public ID T27A1.3 NCBI
Target Description T27A1.3 /REP_DB=WormBase Gene ID /WP=CE14209 /TR=O17272 /GB=AAB71044.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061353 NCBI Caenorhabditis elegans T27A1.3 (T27A1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000021283 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:535888:538503:1 10/11 None
T27A1.3 ENSEMBL cdna:known chromosome:CEL140:II:535576:538307:1 gene:T27A1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021280 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:535575-538202(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27A1.3
Entrez Gene 173444 Entrez gene
SwissProt O17272 EMBL-EBI
WormBase CE14209 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493754 T27A1.3 [Caenorhabditis elegans] gb|AAB71044.1| Hypothetical protein T27A1.3 [Caenorhabditis elegans] 1.0E-130
blast NP_493754 T27A1.3 [Caenorhabditis elegans] gb|AAB71044.1| Hypothetical protein T27A1.3 [Caenorhabditis elegans] 1.0E-108
blast AAB71199 Hypothetical protein C24H12.1 [Caenorhabditis elegans] ref|NP_493736.1| C24H12.1 [Caenorhabditis elegans] 3.0E-86
blast AAB71207 Hypothetical protein C24H12.11 [Caenorhabditis elegans] ref|NP_493734.1| C24H12.11 [Caenorhabditis elegans] 1.0E-83
blast AAB71207 Hypothetical protein C24H12.11 [Caenorhabditis elegans] ref|NP_493734.1| C24H12.11 [Caenorhabditis elegans] 3.0E-81
blast AAB71199 Hypothetical protein C24H12.1 [Caenorhabditis elegans] ref|NP_493736.1| C24H12.1 [Caenorhabditis elegans] 2.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.5E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493754.1 1 5-27
T27A1.3 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:182216_AT
aagcagtcaatatggctgagacctcaaaaaatgttcgaagcagattgaaacaagtgaatc
gtaaaattttcaaactaatcattgaatgccacgaggacttttctggcgtggagaatgctc
ccttttgtcaaagagtaatagttttggacacagagagaaatacgcgatttgtgtatcaat
ttatgatgaatgaagcacgaaaacaaagaatcgactgggcaacacactatgacgtcaatt
actatatcaactttttttgcacgaactacaagaaagagaacaagttgccatgtatgcctt
ataaaacttcacaagagttaatcagttacttgagtattttaaatgactcattttcaatcg
atcatgtcgatttggcaattgaccgcgatagaatgtttggggaatatcggtgcgcgttgg
agcaccctttaattcgaaaatgccattttctcaaactacttggagatgattcgtacatta
ctacagaagatatgaaatttatattaaattatcttgatttgaagcatggacttcttattc
gctgtttacaatgcccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCAGTCAATATGGCTGAGACCTC 148 151 170 Antisense
ATGCCACGAGGACTTTTCTGGCGTG 153 41 255 Antisense
GGCGTGGAGAATGCTCCCTTTTGTC 359 535 274 Antisense
GGCAACACACTATGACGTCAATTAC 61 535 387 Antisense
TATCAACTTTTTTTGCACGAACTAC 138 655 414 Antisense
AGTTGCCATGTATGCCTTATAAAAC 123 63 452 Antisense
GACCGCGATAGAATGTTTGGGGAAT 292 381 550 Antisense
TGGGGAATATCGGTGCGCGTTGGAG 629 551 567 Antisense
TTGGAGCACCCTTTAATTCGAAAAT 691 605 586 Antisense
AAGCATGGACTTCTTATTCGCTGTT 77 151 691 Antisense
CTTATTCGCTGTTTACAATGCCCCT 135 223 703 Antisense
Sequence Source Affymetrix Proprietary Database