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[182215_at] G-protein coupled receptor, srh family

Description C54D10.6 /REP_DB=WormBase Gene ID /WP=CE05502 /TR=Q18834 /GB=CAA99806.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 19      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 10.5
(-2.4)
A 		4.4
(-3)
A 		7.7
(-2.7)
A 		62.6
(3)
A 		58
B 4.1
(-2.9)
A 		59.4
(2.4)
A 		2.6
(-3)
A 		65.5
(3)
A 		63
C 23
(-1.4)
A 		8.1
(-2.8)
A 		5.7
(-3)
A 		71.9
(3)
A 		66
avr 12.5
(-2.3) 		24
(-1.2) 		5.3
(-3) 		66.7
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 21.6
(-1.1)
A 		32
(-0.1)
A 		14.3
(-1.9)
A 		64
(3)
A 		13.2
(-2)
A 		2.6
(-3)
A 		61
B 6.4
(-3)
A 		15.9
(-2)
A 		62.1
(3)
A 		52.9
(2)
A 		52.1
(1.9)
A 		15
(-2.1)
A 		56
C 24.8
(-2)
A 		46.7
(0.5)
A 		68.6
(3)
A 		36
(-0.7)
A 		15.9
(-3)
A 		16.4
(-2.9)
A 		53
avr 17.6
(-2) 		31.5
(0.1) 		48.3
(2.6) 		51
(3) 		27.1
(-0.6) 		11.3
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.8
(-1)
A 		1
(-3)
A 		2
(-2.3)
A 		9.2
(3)
A 		8
B 1.3
(-2.7)
A 		14.7
(3)
A 		0.6
(-3)
A 		13.9
(2.7)
A 		14
C 7.6
(0.3)
A 		2.3
(-2.8)
A 		2
(-3)
A 		12.1
(3)
A 		10
avr 4.2
(-1.4) 		6
(-0.4) 		1.5
(-3) 		11.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 4
(-1.7)
A 		11.4
(1.2)
A 		3.1
(-2)
A 		16.2
(3)
A 		4
(-1.7)
A 		0.6
(-3)
A 		16
B 2.2
(-3)
A 		5.3
(-2)
A 		15.1
(1.1)
A 		14
(0.7)
A 		21.2
(3)
A 		5.6
(-1.9)
A 		19
C 9.2
(-1)
A 		14.3
(1.5)
A 		17.5
(3)
A 		7.2
(-2)
A 		5.1
(-3)
A 		5.5
(-2.8)
A 		12
avr 5.1
(-2.2) 		10.3
(1.5) 		11.9
(2.6) 		12.5
(3) 		10.1
(1.3) 		3.9
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182215_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14761
Sequence Type Exemplar sequence
Representative Public ID C54D10.6 NCBI
Target Description C54D10.6 /REP_DB=WormBase Gene ID /WP=CE05502 /TR=Q18834 /GB=CAA99806.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073718(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073718 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-25) (srh-25) mRNA, complete cds. 10/11 None
GENEFINDER00000038032 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12434953:12446350:-1 11/11 None
C54D10.6 ENSEMBL cdna:known chromosome:CEL140:V:12435066:12436405:-1 gene:C54D10.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038021 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12434952-12436405(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-25
Ensembl C54D10.6
Entrez Gene 183783 Entrez gene
SwissProt Q18834 EMBL-EBI
WormBase CE33043 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99807 Hypothetical protein C54D10.7 [Caenorhabditis elegans] ref|NP_506120.1| C54D10.7 [Caenorhabditis elegans] 0.0
blast CAA99806 Hypothetical protein C54D10.6 [Caenorhabditis elegans] ref|NP_506119.2| Serpentine Receptor, class H family member (srh-25) [Caenorhabditis elegans] 1.0E-180
blast CAA99806 Hypothetical protein C54D10.6 [Caenorhabditis elegans] ref|NP_506119.2| Serpentine Receptor, class H family member (srh-25) [Caenorhabditis elegans] 1.0E-157
blast CAE75485 Hypothetical protein CBG23489 [Caenorhabditis briggsae] 1.0E-124
blast CAE75485 Hypothetical protein CBG23489 [Caenorhabditis briggsae] 1.0E-121
blast CAE75160 Hypothetical protein CBG23097 [Caenorhabditis briggsae] 2.0E-23
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.109999999403954
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.6E-66
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506119.2 7 15-37,58-80,100-119,139-158,202-224,245-267,277-299
C54D10.6 7 15-37,58-80,100-119,139-158,202-224,245-267,277-299
GENEFINDER00000038032 7 1563-1585,1590-1609,1613-1635,1655-1674,1718-1740,1761-1783,1793-1815
Sequence
Target Sequence 
>C. ELEGANS:182215_AT
cgatcccagtacttcatatctacatttgcattgggctgtgttggagcatcaaccaccgtc
ctttttgaatacagacatcaatcggttctcccaaattttcacattcttcgccattcaact
gagtatcgagtattcaaaaatactgtttactacgtaattgcaatattccatgtctggctt
ccaatttattttgaaaacgttgaagatcgagagtcgatcgaaaaaatagtggataactgg
agaaatgcgccatgcgatatttggaatgaaaataccgtagtgttttcagttcaaaaacta
ggatttctacatttttattacatgggtggaattgcaatagttattgttttatctacaata
tatgcggttcactcgttttatattattagagcaacaaggattttgctttcaaatgaaatg
cagaaagtgcagagaaaattcttgaagggcctattattacaggttcttgtaccttactcc
gttcttgttcttcctgcaggattagggctttttattcttcttctaacagatacatgggat
caaagagttaaagtgaacaccgtcgatgaactgacaacgcttccgaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATCCCAGTACTTCATATCTACAT 489 249 298 Antisense
GGCTGTGTTGGAGCATCAACCACCG 194 541 331 Antisense
TACAGACATCAATCGGTTCTCCCAA 83 643 367 Antisense
GTTCTCCCAAATTTTCACATTCTTC 514 443 382 Antisense
ACATTCTTCGCCATTCAACTGAGTA 407 105 398 Antisense
GCAATATTCCATGTCTGGCTTCCAA 341 323 457 Antisense
AATATATGCGGTTCACTCGTTTTAT 555 173 654 Antisense
TACAGGTTCTTGTACCTTACTCCGT 258 643 755 Antisense
GTTCTTGTTCTTCCTGCAGGATTAG 584 443 778 Antisense
GATTAGGGCTTTTTATTCTTCTTCT 62 431 797 Antisense
GATGAACTGACAACGCTTCCGAACA 173 413 862 Antisense
Sequence Source Affymetrix Proprietary Database