[Home] | [Total List]

[182214_at]

Description Y54G9A.2 /REP_DB=WormBase Gene ID /WP=CE19230 /TR=Q9XWH2 /GB=CAA21696.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 06      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 59.8
(3)
A 		34.8
(-3)
A 		50.2
(0.7)
A 		48.6
(0.3)
A 		25
B 56.2
(2.5)
M 		18.8
(-3)
A 		54.5
(2.3)
A 		59.4
(3)
A 		41
C 39.1
(-0.6)
A 		46.8
(-0)
A 		7
(-3)
A 		87.6
(3)
P 		81
avr 51.7
(0.4) 		33.5
(-3) 		37.2
(-2.3) 		65.2
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 66.1
(3)
A 		46.8
(0.4)
A 		49.6
(0.8)
A 		21.8
(-3)
A 		31.2
(-1.7)
A 		59.3
(2.1)
P 		44
B 50.6
(2)
P 		46.1
(1.2)
A 		56
(3)
A 		28.2
(-2)
A 		22.4
(-3)
A 		24.5
(-2.6)
A 		34
C 6.3
(-3)
A 		72.3
(3)
P 		25.8
(-1.2)
A 		46.6
(0.7)
A 		33.8
(-0.5)
A 		59.9
(1.9)
P 		66
avr 41
(-0.3) 		55.1
(3) 		43.8
(0.4) 		32.2
(-2.3) 		29.1
(-3) 		47.9
(1.3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 21.8
(3)
A 		7.5
(-2.8)
A 		13.1
(-0.6)
A 		7.1
(-3)
A 		15
B 17.9
(3)
M 		4.7
(-3)
A 		12.6
(0.6)
A 		12.7
(0.6)
A 		13
C 12.9
(2.1)
A 		13.5
(2.4)
A 		2.4
(-3)
A 		14.8
(3)
P 		12
avr 17.5
(3) 		8.6
(-3) 		9.4
(-2.5) 		11.5
(-1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12.2
(0.6)
A 		16.7
(3)
A 		10.8
(-0.2)
A 		5.5
(-3)
A 		9.4
(-0.9)
A 		14.4
(1.8)
P 		11
B 17.6
(3)
P 		15.3
(1.6)
A 		13.6
(0.6)
A 		7.5
(-3)
A 		9.1
(-2)
A 		9.1
(-2)
A 		10
C 2.3
(-3)
A 		22.1
(3)
P 		6.6
(-1.7)
A 		9.4
(-0.8)
A 		11
(-0.4)
A 		20
(2.4)
P 		20
avr 10.7
(-1.2) 		18
(3) 		10.3
(-1.4) 		7.5
(-3) 		9.8
(-1.7) 		14.5
(1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182214_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3947
Sequence Type Exemplar sequence
Representative Public ID Y54G9A.2 NCBI
Target Description Y54G9A.2 /REP_DB=WormBase Gene ID /WP=CE19230 /TR=Q9XWH2 /GB=CAA21696.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064473(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064473 NCBI Caenorhabditis elegans Y54G9A.2 (Y54G9A.2) mRNA, complete cds. 11/11 None
Y54G9A.2 ENSEMBL cdna:known chromosome:CEL140:II:13705708:13707498:-1 gene:Y54G9A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13705704-13707495(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y54G9A.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_496874 Y54G9A.2 [Caenorhabditis elegans] 5.0E-65
Sequence
Target Sequence 
>C. ELEGANS:182214_AT
ctcctccagcgtatcataagtttttcgccgctgtctcggagggtgcagaatatcgcgtat
ctcccaagtgccgatgaagctacagagggtactgaattgaaaatgcatggagcagcagct
tgctctttttcattaaaagaccaacaaagcaaactggaatatccgcaaagaatagtagat
tcaaggccggaaaaagaatgtgagaataaatccgaaaatctggtagtggtggagaataat
gaaatgatagtgagtgtgagagagagagaaaagagtgctgctagagaaggtatggacact
ccttccactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCTCCAGCGTATCATAAGTTTTT 427 233 37 Antisense
CGTATCATAAGTTTTTCGCCGCTGT 661 245 46 Antisense
CCGCTGTCTCGGAGGGTGCAGAATA 393 263 64 Antisense
GGTGCAGAATATCGCGTATCTCCCA 162 501 78 Antisense
GTATCTCCCAAGTGCCGATGAAGCT 294 455 93 Antisense
GAAAATGCATGGAGCAGCAGCTTGC 372 353 135 Antisense
AGCAGCTTGCTCTTTTTCATTAAAA 434 77 150 Antisense
AACAAAGCAAACTGGAATATCCGCA 705 127 179 Antisense
AAATCCGAAAATCTGGTAGTGGTGG 192 1 244 Antisense
GAGTGCTGCTAGAGAAGGTATGGAC 59 401 309 Antisense
GAAGGTATGGACACTCCTTCCACTG 194 335 322 Antisense
Sequence Source Affymetrix Proprietary Database