[Home] | [Total List]

[182213_at]

Description Y4C6B.1 /REP_DB=WormBase Gene ID /WP=CE21305 /TR=Q9UB01 /GB=AAD14764.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 97      4grp_high_8_8 > 51      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 52      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 280.3
(-1.4)
P 		331.3
(3)
P 		302.9
(0.5)
P 		261.9
(-3)
M 		69
B 252.1
(1.5)
P 		184.6
(-3)
P 		274
(3)
P 		220.3
(-0.6)
P 		89
C 278.4
(0.3)
P 		338.3
(3)
P 		221.5
(-2.4)
P 		207.4
(-3)
A 		131
avr 270.3
(1.4) 		284.7
(3) 		266.1
(1) 		229.9
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 523
1 2 3 4 5 6 range
A 164.6
(-2.8)
P 		206.6
(-2.3)
P 		147.2
(-3)
P 		252.4
(-1.8)
P 		475.8
(0.8)
P 		670.5
(3)
P 		523
B 186.6
(-3)
P 		240.8
(-2.1)
P 		310.9
(-1)
P 		230.8
(-2.3)
P 		396.1
(0.4)
P 		553.4
(3)
P 		367
C 169.6
(-3)
P 		269.2
(-1.8)
P 		272.3
(-1.7)
P 		321.6
(-1.1)
P 		404.3
(-0.1)
P 		654.8
(3)
P 		485
avr 173.6
(-3) 		238.9
(-2.1) 		243.5
(-2.1) 		268.3
(-1.7) 		425.4
(0.3) 		626.2
(3) 		453
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 102
(3)
P 		71.9
(0.2)
P 		79.2
(0.9)
P 		38.3
(-3)
M 		64
B 80.4
(3)
P 		45.6
(-3)
P 		63.5
(0.1)
P 		46.9
(-2.8)
P 		35
C 92.2
(2.5)
P 		97.3
(3)
P 		77.2
(1.1)
P 		35
(-3)
A 		62
avr 91.5
(3) 		71.6
(0.7) 		73.3
(0.9) 		40.1
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 30.3
(-3)
P 		73.5
(-1)
P 		32.1
(-2.9)
P 		64
(-1.5)
P 		143.6
(2.1)
P 		163.2
(3)
P 		133
B 64.9
(-2.8)
P 		80.2
(-2.2)
P 		75.5
(-2.4)
P 		61.1
(-3)
P 		160.9
(1.1)
P 		206.4
(3)
P 		145
C 62.9
(-3)
P 		82.1
(-2.3)
P 		69.3
(-2.8)
P 		64.7
(-2.9)
P 		130.8
(-0.4)
P 		219.2
(3)
P 		156
avr 52.7
(-3) 		78.6
(-1.9) 		59
(-2.7) 		63.3
(-2.6) 		145.1
(0.9) 		196.3
(3) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182213_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10388
Sequence Type Exemplar sequence
Representative Public ID Y4C6B.1 NCBI
Target Description Y4C6B.1 /REP_DB=WormBase Gene ID /WP=CE21305 /TR=Q9UB01 /GB=AAD14764.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068385 NCBI Caenorhabditis elegans Y4C6B.1 (Y4C6B.1) mRNA, complete cds. 11/11 None
SNAP00000011101 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5354481:5356313:1 11/11 None
GENEFINDER00000011108 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5354481:5356313:1 11/11 None
Y4C6B.1 ENSEMBL cdna:known chromosome:CEL140:IV:5354477:5356531:1 gene:Y4C6B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5354486-5356319(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y4C6B.1
Entrez Gene 177315 Entrez gene
SwissProt Q9UB01 EMBL-EBI
WormBase CE21305 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14764 Hypothetical protein Y4C6B.1 [Caenorhabditis elegans] ref|NP_500786.1| Y4C6B.1 [Caenorhabditis elegans] 0.0
blast CAE72724 Hypothetical protein CBG19961 [Caenorhabditis briggsae] 1.0E-139
Sequence
Target Sequence 
>C. ELEGANS:182213_AT
agagcatcatccagagcgagttctagaagaggcggaataattgcaaaaaaagcttctctc
gaaatctcctccaactcctcgtcagacgtatctgaagatgaaggaaaaggtccatcagtc
tgctcaccatcttcaagctccaaaacctccacagcgtctgtccaacttgctccaatgtgc
atggctccaccaccaccacctccgccaccgctgccaaagatgtctcaaaagatcccgctc
tctgagatcaaatcagacaacaaactttccacagtaacaccatcaaagcctgctgaaaag
aaatcatctccaaaatctcttccgccagcagaaacaattgtgtcgaatcggccgtacttg
acggatattgctcatggaagaagcatgttgaagaagaccgttagatctcccggtggatcg
cctgcttgccaagttcgtcaccaaaagcgtccagtatcatctttcgaagctgctctccgt
gatcgttttcgtggcttccatggtgatgcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCATCATCCAGAGCGAGTTCTA 700 67 769 Antisense
CTCCAACTCCTCGTCAGACGTATCT 423 235 837 Antisense
AGGAAAAGGTCCATCAGTCTGCTCA 322 55 870 Antisense
AACTTGCTCCAATGTGCATGGCTCC 332 139 932 Antisense
AGATCCCGCTCTCTGAGATCAAATC 180 67 998 Antisense
AATCTCTTCCGCCAGCAGAAACAAT 261 169 1082 Antisense
GTGTCGAATCGGCCGTACTTGACGG 358 483 1108 Antisense
AAGACCGTTAGATCTCCCGGTGGAT 493 153 1162 Antisense
GCCAAGTTCGTCACCAAAAGCGTCC 72 269 1196 Antisense
AGCGTCCAGTATCATCTTTCGAAGC 484 81 1214 Antisense
TCGTGGCTTCCATGGTGATGCATCA 56 605 1257 Antisense
Sequence Source Affymetrix Proprietary Database