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[182212_at]

Description C31E10.4 /REP_DB=WormBase Gene ID /WP=CE08504 /TR=Q93313 /GB=CAB01730.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 28.8
(-1.9)
A 		17.7
(-2.8)
A 		15.4
(-3)
A 		90.5
(3)
A 		75
B 11.3
(-3)
A 		39.5
(3)
A 		35.1
(2.1)
A 		38.1
(2.7)
A 		28
C 7.4
(-3)
A 		19.7
(-2.1)
A 		7.9
(-3)
A 		85.8
(3)
A 		78
avr 15.8
(-3) 		25.6
(-1.9) 		19.5
(-2.6) 		71.5
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 60.2
(3)
A 		11.6
(-2.4)
A 		6.8
(-3)
A 		6.4
(-3)
A 		49.8
(1.8)
A 		11
(-2.5)
A 		54
B 33
(3)
A 		8.6
(-2.3)
A 		10.4
(-1.9)
A 		9.8
(-2.1)
A 		5.6
(-3)
A 		12.6
(-1.5)
A 		27
C 11.4
(-2.8)
A 		33.5
(2.7)
A 		34.7
(3)
A 		20.7
(-0.5)
A 		10.8
(-3)
A 		13.7
(-2.3)
A 		24
avr 34.9
(3) 		17.9
(-1.5) 		17.3
(-1.7) 		12.3
(-3) 		22.1
(-0.4) 		12.4
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 10.5
(1.3)
A 		3.8
(-3)
A 		4
(-2.9)
A 		13.2
(3)
A 		9
B 3.6
(-3)
A 		9.8
(3)
A 		8.1
(1.4)
A 		8.1
(1.4)
A 		6
C 2.5
(-3)
A 		5.7
(-1.4)
A 		2.8
(-2.9)
A 		14.5
(3)
A 		12
avr 5.5
(-2.6) 		6.4
(-1.8) 		5
(-3) 		11.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 11.1
(1.3)
A 		4.1
(-1.8)
A 		1.5
(-3)
A 		1.6
(-3)
A 		15
(3)
A 		2.7
(-2.5)
A 		14
B 11.5
(3)
A 		2.9
(-2.6)
A 		2.5
(-2.9)
A 		2.6
(-2.8)
A 		2.3
(-3)
A 		4.7
(-1.4)
A 		9
C 4.2
(-2.4)
A 		10.2
(3)
A 		8.8
(1.7)
A 		4.2
(-2.4)
A 		3.5
(-3)
A 		4.6
(-2)
A 		7
avr 8.9
(3) 		5.7
(-0.1) 		4.3
(-1.5) 		2.8
(-3) 		6.9
(1) 		4
(-1.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182212_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17445
Sequence Type Exemplar sequence
Representative Public ID C31E10.4 NCBI
Target Description C31E10.4 /REP_DB=WormBase Gene ID /WP=CE08504 /TR=Q93313 /GB=CAB01730.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077931(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077931 NCBI Caenorhabditis elegans C31E10.4 (C31E10.4) mRNA, complete cds. 11/11 None
C31E10.4 ENSEMBL cdna:known chromosome:CEL140:X:13989416:13990082:1 gene:C31E10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027026 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13989415-13990082(+) 67.79 100.0
Public Domain and Genome References
Gene Title
Ensembl C31E10.4
Entrez Gene 183088 Entrez gene
SwissProt Q93313 EMBL-EBI
WormBase CE08504 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01730 Hypothetical protein C31E10.4 [Caenorhabditis elegans] ref|NP_510332.1| C31E10.4 [Caenorhabditis elegans] 1.0E-100
blast CAE63053 Hypothetical protein CBG07326 [Caenorhabditis briggsae] 2.0E-16
Sequence
Target Sequence 
>C. ELEGANS:182212_AT
ttgggacaccaaccagtatcagccgccgacatctcacggactccgcgcgccggtgtattc
aactcgttgtgggcgtagcatgctgttccgtcccatcagctacaaggaaaataaagcagc
gccacgatgccatgacgatgcgccggctgatctccgtgattttccaaaaaaaaaaacggg
gcttgaatttcggactttacacttctccagcaattcagttaatttcaaatccgaatctca
aagatatattcatcaataatatggcgtatccatatacacctggaccagaccgttttatca
tccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGGACACCAACCAGTATCAGCCG 175 709 26 Antisense
CGCCGGTGTATTCAACTCGTTGTGG 229 255 73 Antisense
TCGTTGTGGGCGTAGCATGCTGTTC 132 603 89 Antisense
TTCCGTCCCATCAGCTACAAGGAAA 201 697 111 Antisense
AATAAAGCAGCGCCACGATGCCATG 116 171 135 Antisense
CACGATGCCATGACGATGCGCCGGC 634 199 148 Antisense
GCTGATCTCCGTGATTTTCCAAAAA 686 295 171 Antisense
GGCTTGAATTTCGGACTTTACACTT 268 537 205 Antisense
ACTTTACACTTCTCCAGCAATTCAG 324 101 219 Antisense
GGCGTATCCATATACACCTGGACCA 577 541 288 Antisense
GGACCAGACCGTTTTATCATCCGAA 263 519 307 Antisense
Sequence Source Affymetrix Proprietary Database