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[182211_s_at]

Description C01G8.1 /REP_DB=WormBase Gene ID /WP=CE07801 /TR=P91011 /GB=AAB37638.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 104.7
(-0.3)
A 		90.5
(-1)
A 		47.3
(-3)
A 		174.7
(3)
A 		127
B 96.4
(-1.1)
A 		92.3
(-1.5)
A 		74.9
(-3)
A 		142.7
(3)
A 		68
C 80
(-3)
A 		127.1
(3)
A 		94.4
(-1.2)
A 		94.4
(-1.2)
A 		47
avr 93.7
(-1) 		103.3
(-0.1) 		72.2
(-3) 		137.3
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1396
1 2 3 4 5 6 range
A 64.5
(-2.9)
A 		47.1
(-3)
A 		113.8
(-2.7)
A 		170
(-2.5)
M 		634.9
(-0.4)
P 		1400
(3)
P 		1353
B 67.9
(-2.9)
A 		48.8
(-3)
A 		96
(-2.8)
A 		137.7
(-2.6)
A 		753.2
(0.4)
P 		1298.7
(3)
P 		1250
C 47.3
(-3)
A 		107.5
(-2.7)
A 		149.8
(-2.6)
A 		180.1
(-2.4)
P 		879.6
(0.6)
P 		1443.1
(3)
P 		1396
avr 59.9
(-3) 		67.8
(-3) 		119.9
(-2.7) 		162.6
(-2.5) 		755.9
(0.2) 		1380.6
(3) 		1321
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 38.1
(3)
A 		19.6
(-1.3)
A 		12.4
(-3)
A 		25.6
(0.1)
A 		26
B 30.8
(3)
A 		22.8
(-0.6)
A 		17.4
(-3)
A 		30.4
(2.8)
A 		13
C 26.5
(0.1)
A 		36.5
(3)
A 		32.9
(2)
A 		15.9
(-3)
A 		21
avr 31.8
(3) 		26.3
(-0) 		20.9
(-3) 		24
(-1.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 472
1 2 3 4 5 6 range
A 11.9
(-3)
A 		16.7
(-2.9)
A 		24.8
(-2.8)
A 		43.1
(-2.4)
M 		191.6
(0.3)
P 		340.8
(3)
P 		329
B 23.6
(-2.9)
A 		16.2
(-3)
A 		23.3
(-2.9)
A 		36.5
(-2.7)
A 		306
(0.7)
P 		484.3
(3)
P 		468
C 17.5
(-3)
A 		32.8
(-2.8)
A 		38.1
(-2.7)
A 		36.2
(-2.8)
P 		284.6
(0.4)
P 		483.1
(3)
P 		466
avr 17.7
(-3) 		21.9
(-2.9) 		28.7
(-2.8) 		38.6
(-2.7) 		260.7
(0.5) 		436.1
(3) 		418
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182211_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1469
Sequence Type Exemplar sequence
Representative Public ID C01G8.1 NCBI
Target Description C01G8.1 /REP_DB=WormBase Gene ID /WP=CE07801 /TR=P91011 /GB=AAB37638.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059154(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059154 NCBI Caenorhabditis elegans C01G8.1 (C01G8.1) mRNA, complete cds. 11/11 None
SNAP00000016689 ENSEMBL cdna:SNAP chromosome:CEL140:I:5273015:5274211:-1 11/11 None
GENEFINDER00000016704 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5273015:5274211:-1 11/11 None
C01G8.1 ENSEMBL cdna:known chromosome:CEL140:I:5272846:5274309:-1 gene:C01G8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5273014-5274211(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G8.1
Entrez Gene 172170 Entrez gene
SwissProt P91011 EMBL-EBI
WormBase CE07801 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37638 Hypothetical protein C01G8.1 [Caenorhabditis elegans] ref|NP_491555.1| C01G8.1 [Caenorhabditis elegans] 1.0E-155
blast CAE67380 Hypothetical protein CBG12862 [Caenorhabditis briggsae] 1.0E-92
Sequence
Target Sequence 
>C. ELEGANS:182211_S_AT
tgagagcagcagtagcactcgcagcctcgtcggttcagattcgattaaatctcgtttgga
gtctatgactattgacgggacaagctcggtgcttcaacacgtggattcactcaccaattc
agtttactcggctgaattctgtcaagaagtggattctcaaaatacgtgtgatgcgaagag
tcgtgaacttccagtcgattgtgacattccaactgctactgagccactaccaatctcgac
gaaatctaacccggtttccaactcatcgttgacgtatatggctgatgtcaagctgatact
gccggataagcgagatgagaaatcggaagaagttgctggaatgaagcagctcaacgccga
gcttgacggcttattgaaaacttctgctcctccattccaagtctcaactgctcgtcttcc
accaatgctgagagagcttccaccaccagccaatgatgagtcaatgctcagtggaaatga
tgaatttgacgattcgaagaacaattcggttgctcggtatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGAGCAGCAGTAGCACTCGCAGC 579 567 372 Antisense
AGCCTCGTCGGTTCAGATTCGATTA 652 83 394 Antisense
AAGCTCGGTGCTTCAACACGTGGAT 134 151 453 Antisense
ACGTGGATTCACTCACCAATTCAGT 101 95 470 Antisense
GAGTCGTGAACTTCCAGTCGATTGT 427 399 549 Antisense
CCGGTTTCCAACTCATCGTTGACGT 189 263 622 Antisense
AGCTCAACGCCGAGCTTGACGGCTT 266 73 719 Antisense
TTATTGAAAACTTCTGCTCCTCCAT 128 679 742 Antisense
CGTCTTCCACCAATGCTGAGAGAGC 159 247 784 Antisense
TTCCACCACCAGCCAATGATGAGTC 573 699 809 Antisense
GAACAATTCGGTTGCTCGGTATCTC 467 353 870 Antisense
Sequence Source Affymetrix Proprietary Database