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[182210_at]

Description K03H1.12 /REP_DB=WormBase Gene ID /WP=CE21018 /TR=Q9XVX7 /GB=CAA82666.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 29      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 11
(3)
A 		5.2
(-3)
A 		6.4
(-1.8)
A 		6.5
(-1.7)
A 		6
B 9.1
(-0.1)
A 		9.3
(0.1)
A 		5.7
(-3)
A 		12.7
(3)
A 		7
C 5.7
(-2.6)
A 		8.7
(3)
A 		5.5
(-3)
A 		5.6
(-2.8)
A 		3
avr 8.6
(3) 		7.7
(1) 		5.9
(-3) 		8.3
(2.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 11.8
(-2.6)
A 		9.3
(-2.7)
A 		4
(-3)
A 		8.9
(-2.7)
A 		12.1
(-2.6)
A 		116.1
(3)
A 		112
B 5.1
(-3)
A 		4.9
(-3)
A 		6.7
(-2.7)
A 		14.8
(-1.5)
A 		6
(-2.8)
A 		45.7
(3)
A 		41
C 5.6
(-2.9)
A 		5.2
(-2.9)
A 		4.6
(-3)
A 		5.9
(-2.9)
A 		64.2
(3)
A 		41.4
(0.7)
A 		60
avr 7.5
(-2.8) 		6.5
(-2.9) 		5.1
(-3) 		9.9
(-2.5) 		27.4
(-0.9) 		67.7
(3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 4
(3)
A 		1.1
(-2.6)
A 		1.7
(-1.5)
A 		0.9
(-3)
A 		3
B 2.9
(3)
A 		2.3
(0.8)
A 		1.3
(-3)
A 		2.7
(2.3)
A 		2
C 1.9
(0.8)
A 		2.5
(3)
A 		1.9
(0.8)
A 		0.9
(-3)
A 		2
avr 2.9
(3) 		2
(-0.9) 		1.6
(-2.6) 		1.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.2
(-2.7)
A 		3.3
(-2.5)
A 		0.9
(-3)
A 		2.2
(-2.7)
A 		3.6
(-2.4)
A 		28.3
(3)
A 		27
B 1.8
(-2.9)
A 		1.6
(-3)
A 		1.6
(-3)
A 		3.9
(-2.1)
A 		2.5
(-2.6)
A 		17
(3)
A 		15
C 2.1
(-2.7)
A 		1.6
(-2.9)
A 		1.2
(-3)
A 		1.2
(-3)
A 		20.8
(3)
A 		13.9
(0.9)
A 		20
avr 2
(-2.7) 		2.2
(-2.7) 		1.2
(-3) 		2.4
(-2.6) 		9
(-0.5) 		19.7
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7937
Sequence Type Exemplar sequence
Representative Public ID K03H1.12 NCBI
Target Description K03H1.12 /REP_DB=WormBase Gene ID /WP=CE21018 /TR=Q9XVX7 /GB=CAA82666.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066806(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066806 NCBI Caenorhabditis elegans K03H1.12 (K03H1.12) mRNA, complete cds. 11/11 None
SNAP00000019345 ENSEMBL cdna:SNAP chromosome:CEL140:III:9940717:9942187:1 11/11 None
GENEFINDER00000019362 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9941740:9942187:1 11/11 None
K03H1.12 ENSEMBL cdna:known chromosome:CEL140:III:9941537:9942187:1 gene:K03H1.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9941735-9942183(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03H1.12
Entrez Gene 176406 Entrez gene
SwissProt Q9XVX7 EMBL-EBI
WormBase CE21018 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82666 Hypothetical protein K03H1.12 [Caenorhabditis elegans] ref|NP_499207.1| K03H1.12 [Caenorhabditis elegans] 2.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499207.1 1 82-104
K03H1.12 1 82-104
SNAP00000019345 1 112-134
GENEFINDER00000019362 1 82-104
Sequence
Target Sequence 
>C. ELEGANS:182210_AT
ctcggacaccaccgacgtttgtgaacgttccaccaccaccggcaggaatccagaaggaca
gaagtgtttccaaaaatgacaccactcctgaaccaaaagcgagtacaaaggacgcatcat
ccgtgcttatggatccagagaatgagaacaaaagcggctcttcaaaattgccacttgtga
ttcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGGACACCACCGACGTTTGTGAA 673 227 50 Antisense
GACACCACCGACGTTTGTGAACGTT 636 365 54 Antisense
CACCACCGGCAGGAATCCAGAAGGA 280 201 83 Antisense
TCCAGAAGGACAGAAGTGTTTCCAA 562 587 98 Antisense
GTTTCCAAAAATGACACCACTCCTG 393 451 115 Antisense
CCAAAAATGACACCACTCCTGAACC 212 275 119 Antisense
TCCTGAACCAAAAGCGAGTACAAAG 690 589 135 Antisense
AAAGGACGCATCATCCGTGCTTATG 607 121 156 Antisense
TCATCCGTGCTTATGGATCCAGAGA 145 623 166 Antisense
AGCGGCTCTTCAAAATTGCCACTTG 534 81 202 Antisense
TCAAAATTGCCACTTGTGATTCGAA 555 629 211 Antisense
Sequence Source Affymetrix Proprietary Database