[Home] | [Total List]

[182209_s_at]

Description T05E7.5 /REP_DB=WormBase Gene ID /WP=CE13239 /TR=O01861 /GB=AAB54217.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 0.9
(-3)
A 		1.9
(0.5)
A 		2
(0.9)
A 		2.6
(3)
A 		2
B 1.6
(-2.8)
A 		1.5
(-2.9)
A 		1
(-3)
A 		23.8
(3)
A 		23
C 1.1
(-2.9)
A 		0.7
(-3)
A 		0.6
(-3)
A 		55.6
(3)
P 		55
avr 1.2
(-3) 		1.4
(-3) 		1.2
(-3) 		27.3
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 4
(-2.8)
A 		0.7
(-3)
A 		2.1
(-2.9)
A 		16.2
(-1.9)
A 		18.2
(-1.8)
A 		88.9
(3)
P 		88
B 6.9
(-2.7)
A 		1.6
(-3)
A 		1.3
(-3)
A 		4.9
(-2.8)
A 		12.4
(-2.4)
A 		109.1
(3)
P 		108
C 2.4
(-3)
A 		1.4
(-3)
A 		2.3
(-3)
A 		5.5
(-2.8)
A 		23.6
(-2.2)
A 		159.8
(3)
P 		158
avr 4.4
(-2.8) 		1.2
(-3) 		1.9
(-3) 		8.9
(-2.6) 		18.1
(-2.1) 		119.3
(3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.3
(-3)
A 		0.4
(0)
A 		0.5
(3)
A 		0.4
(0)
A 		0
B 0.5
(-2.6)
A 		0.4
(-2.8)
A 		0.2
(-3)
A 		5.1
(3)
A 		5
C 0.4
(-2.9)
A 		0.2
(-3)
A 		0.2
(-3)
A 		9.4
(3)
P 		9
avr 0.4
(-2.9) 		0.3
(-3) 		0.3
(-3) 		5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 0.7
(-2.9)
A 		0.3
(-3)
A 		0.5
(-2.9)
A 		4.1
(-1.9)
A 		5.5
(-1.5)
A 		21.6
(3)
P 		21
B 2.4
(-2.7)
A 		0.5
(-3)
A 		0.3
(-3)
A 		1.3
(-2.9)
A 		5
(-2.3)
A 		40.7
(3)
P 		40
C 0.9
(-2.9)
A 		0.4
(-3)
A 		0.6
(-3)
A 		1.1
(-2.9)
A 		7.6
(-2.2)
A 		53.5
(3)
P 		53
avr 1.3
(-2.9) 		0.4
(-3) 		0.5
(-3) 		2.2
(-2.7) 		6
(-2.1) 		38.6
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182209_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1384
Sequence Type Exemplar sequence
Representative Public ID T05E7.5 NCBI
Target Description T05E7.5 /REP_DB=WormBase Gene ID /WP=CE13239 /TR=O01861 /GB=AAB54217.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059386 NCBI Caenorhabditis elegans T05E7.5 (T05E7.5) mRNA, complete cds. 11/11 None
SNAP00000044427 ENSEMBL cdna:SNAP chromosome:CEL140:I:6209160:6211117:-1 11/11 None
GENEFINDER00000044433 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6209160:6210201:-1 11/11 None
T05E7.5 ENSEMBL cdna:known chromosome:CEL140:I:6209002:6210481:-1 gene:T05E7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6209088-6210410(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05E7.5
Entrez Gene 172308 Entrez gene
SwissProt O01861 EMBL-EBI
WormBase CE13239 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54217 Hypothetical protein T05E7.5 [Caenorhabditis elegans] ref|NP_491787.1| T05E7.5 [Caenorhabditis elegans] 0.0
blast AAB54217 Hypothetical protein T05E7.5 [Caenorhabditis elegans] ref|NP_491787.1| T05E7.5 [Caenorhabditis elegans] 1.0E-179
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 5.0E-15
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 6.0E-15
blast XP_649259 hypothetical protein 326.t00008 [Entamoeba histolytica HM-1:IMSS] gb|EAL43878.1| hypothetical protein 326.t00008 [Entamoeba histolytica HM-1:IMSS] 3.0E-13
Sequence
Target Sequence 
>C. ELEGANS:182209_S_AT
gacaatcggccatttgtatgggagtgagatatgaattgaatatggaaaaggattcgagag
agagatatttcaaagaagctcaacaattgaaacaagagaaagatgtattggtacatgaaa
tcaatgaaagagaagtcagaattttgtgtctgagaagtgatattcttacattgaaatctg
aaaacaacgacacctctaaggaacttgatgaaatgaaaaatggaaccaaagctttgaaac
atgaacttgaagagaccaagaaaatgaaatccgaagccttgtcgaaatatgaagaatctc
aaaaagagttcgaacagttcaacttgaagttccaaagattgtgcacaaagttctacgagg
aacgtgtctcttctcagacaacttcacctaaaatgaaagaacatctggcatctgctaaga
aacgattgtctgctatcaaggaaacactcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATCGGCCATTTGTATGGGAGT 546 363 659 Antisense
GAAATCTGAAAACAACGACACCTCT 357 361 831 Antisense
ACGACACCTCTAAGGAACTTGATGA 241 93 845 Antisense
GAAATCCGAAGCCTTGTCGAAATAT 248 361 924 Antisense
ACTTGAAGTTCCAAAGATTGTGCAC 292 97 980 Antisense
GATTGTGCACAAAGTTCTACGAGGA 69 433 995 Antisense
TACGAGGAACGTGTCTCTTCTCAGA 512 647 1012 Antisense
CTCTTCTCAGACAACTTCACCTAAA 100 231 1026 Antisense
GAAAGAACATCTGGCATCTGCTAAG 373 359 1053 Antisense
GCTAAGAAACGATTGTCTGCTATCA 135 303 1072 Antisense
TGTCTGCTATCAAGGAAACACTCCA 6 559 1085 Antisense
Sequence Source Affymetrix Proprietary Database