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[182208_at]

Description D1069.1 /REP_DB=WormBase Gene ID /WP=CE17613 /TR=O44789 /GB=AAB94946.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 43      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 48.2
(-1.5)
A 		93.9
(3)
A 		49.2
(-1.4)
A 		32.9
(-3)
A 		61
B 64
(3)
A 		12.7
(-3)
A 		52.6
(1.7)
A 		27.2
(-1.3)
A 		51
C 15.3
(-3)
A 		156.7
(3)
A 		51.3
(-1.5)
A 		16.3
(-3)
A 		141
avr 42.5
(-1.4) 		87.8
(3) 		51
(-0.5) 		25.5
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 62.9
(3)
M 		49.6
(1.1)
A 		20.8
(-3)
A 		41.8
(-0)
A 		31.8
(-1.4)
A 		48.1
(0.9)
A 		42
B 60.2
(3)
A 		50.9
(2)
A 		10.9
(-2.2)
A 		40.3
(0.9)
A 		37.9
(0.7)
A 		2.9
(-3)
A 		57
C 102.1
(1.9)
P 		68
(0.1)
A 		122.9
(3)
P 		19.7
(-2.4)
A 		40.2
(-1.4)
A 		9.1
(-3)
A 		114
avr 75.1
(3) 		56.2
(0.9) 		51.5
(0.4) 		33.9
(-1.5) 		36.6
(-1.2) 		20
(-3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 17.6
(1.9)
A 		20.4
(3)
A 		12.9
(0.1)
A 		4.8
(-3)
A 		16
B 20.4
(3)
A 		3.1
(-3)
A 		12.2
(0.2)
A 		5.8
(-2.1)
A 		17
C 5.1
(-2.7)
A 		45.1
(3)
A 		17.9
(-0.9)
A 		2.8
(-3)
A 		42
avr 14.4
(0.2) 		22.9
(3) 		14.3
(0.2) 		4.5
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 11.6
(0.3)
M 		17.6
(3)
A 		4.5
(-3)
A 		10.6
(-0.2)
A 		9.6
(-0.7)
A 		11.7
(0.3)
A 		13
B 20.9
(3)
A 		16.9
(1.8)
A 		2.7
(-2.5)
A 		10.7
(-0.1)
A 		15.4
(1.3)
A 		1.1
(-3)
A 		20
C 37.8
(3)
P 		20.7
(0)
A 		31.3
(1.9)
P 		4
(-2.8)
A 		13
(-1.3)
A 		3.1
(-3)
A 		35
avr 23.4
(3) 		18.4
(1.3) 		12.8
(-0.5) 		8.4
(-2) 		12.7
(-0.5) 		5.3
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182208_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4243
Sequence Type Exemplar sequence
Representative Public ID D1069.1 NCBI
Target Description D1069.1 /REP_DB=WormBase Gene ID /WP=CE17613 /TR=O44789 /GB=AAB94946.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061313(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061313 NCBI Caenorhabditis elegans D1069.1 (D1069.1) mRNA, complete cds. 11/11 None
D1069.1 ENSEMBL cdna:known chromosome:CEL140:II:340538:342472:1 gene:D1069.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035336 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035339 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:340537-342472(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1069.1
Entrez Gene 183923 Entrez gene
SwissProt O44789 EMBL-EBI
WormBase CE17613 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493714 D1069.1 [Caenorhabditis elegans] gb|AAB94946.1| Hypothetical protein D1069.1 [Caenorhabditis elegans] 1.0E-170
blast CAE56510 Hypothetical protein CBG24230 [Caenorhabditis briggsae] 7.0E-35
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493714.1 3 7-29,88-110,117-139
D1069.1 3 7-29,88-110,117-139
Sequence
Target Sequence 
>C. ELEGANS:182208_AT
gtttcattggattgttctcaccacgtgcaaggcttggattacctgctgcaagtactgctg
gattggcatttgtctgtttattcatttcgattgttgtctacggggttcgaatgcaatata
aaactagtgagttttcccaaaataagtttttttccaagaaaatcgataattctttttttt
ttgaatttctgatttccagacaatcgaaaattttcaaaataattctgatttctaaacaga
aactccgcaaatttccatttcaagtggttatcccttccgaccaatcagcgatgcttagag
ggggcgtggccaacgtcgttgatttgtcaacacaaaaacttcagattaaggctcaaatta
gatcgattttttcaattagaaatacctgggatgaagtcaacttttcttggtttacgaaat
attctccaaaagctgtaattattaatttcttctccgaccaatcagcgatgcccaatcaat
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCATTGGATTGTTCTCACCACG 652 449 329 Antisense
TTCTCACCACGTGCAAGGCTTGGAT 641 689 343 Antisense
GGATTACCTGCTGCAAGTACTGCTG 116 509 364 Antisense
GGCATTTGTCTGTTTATTCATTTCG 386 537 393 Antisense
GATTGTTGTCTACGGGGTTCGAATG 58 433 417 Antisense
GAAACTCCGCAAATTTCCATTTCAA 547 357 567 Antisense
CATTTCAAGTGGTTATCCCTTCCGA 515 213 584 Antisense
AGCGATGCTTAGAGGGGGCGTGGCC 36 67 615 Antisense
GGGCGTGGCCAACGTCGTTGATTTG 638 491 630 Antisense
ATTATTAATTTCTTCTCCGACCAAT 589 13 766 Antisense
ACCAATCAGCGATGCCCAATCAATT 156 85 785 Antisense
Sequence Source Affymetrix Proprietary Database