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[182207_at]

Description F18E9.1 /REP_DB=WormBase Gene ID /WP=CE02658 /TR=Q19571 /GB=AAA68807.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 45      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 161
(3)
A 		157.5
(2.9)
A 		42.2
(-1.6)
A 		5
(-3)
A 		156
B 140.3
(3)
A 		86.7
(-0)
A 		38.1
(-2.8)
A 		34.7
(-3)
A 		106
C 158.4
(3)
A 		16.1
(-3)
A 		53.8
(-1.4)
A 		44.3
(-1.8)
A 		142
avr 153.2
(3) 		86.8
(-0.2) 		44.7
(-2.2) 		28
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 123.1
(3)
A 		123
(3)
A 		109.6
(2.3)
A 		58.5
(-0.4)
A 		9.3
(-3)
A 		8.5
(-3)
A 		115
B 161.8
(3)
A 		96.7
(0.3)
A 		103.2
(0.5)
A 		38.4
(-2.2)
A 		50.9
(-1.6)
A 		18.4
(-3)
A 		143
C 143.2
(2.5)
A 		155.1
(3)
A 		15.2
(-2.8)
A 		12.4
(-2.9)
A 		13.4
(-2.9)
A 		10.3
(-3)
A 		145
avr 142.7
(3) 		124.9
(2.2) 		76
(-0.1) 		36.4
(-1.9) 		24.5
(-2.4) 		12.4
(-3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 58.6
(3)
A 		34.2
(0.5)
A 		11
(-1.9)
A 		0.7
(-3)
A 		58
B 44.7
(3)
A 		21.4
(-0.7)
A 		8.8
(-2.8)
A 		7.4
(-3)
A 		37
C 52.4
(3)
A 		4.6
(-3)
A 		18.8
(-1.2)
A 		7.5
(-2.6)
A 		48
avr 51.9
(3) 		20.1
(-1.1) 		12.9
(-2) 		5.2
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 22.7
(-0)
A 		43.7
(3)
A 		23.9
(0.1)
A 		14.8
(-1.2)
A 		2.8
(-2.9)
A 		2.1
(-3)
A 		42
B 56.3
(3)
A 		32.2
(0.1)
A 		25.1
(-0.8)
A 		10.2
(-2.6)
A 		20.7
(-1.3)
A 		6.8
(-3)
A 		50
C 53.1
(3)
A 		47.3
(2.3)
A 		3.9
(-2.8)
A 		2.5
(-3)
A 		4.3
(-2.8)
A 		3.4
(-2.9)
A 		51
avr 44
(3) 		41.1
(2.6) 		17.6
(-1) 		9.2
(-2.2) 		9.3
(-2.2) 		4.1
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182207_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16927
Sequence Type Exemplar sequence
Representative Public ID F18E9.1 NCBI
Target Description F18E9.1 /REP_DB=WormBase Gene ID /WP=CE02658 /TR=Q19571 /GB=AAA68807.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077057 NCBI Caenorhabditis elegans F18E9.1 (F18E9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000039255 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8599878:8602209:1 10/11 None
F18E9.1 ENSEMBL cdna:known chromosome:CEL140:X:8599878:8602122:1 gene:F18E9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039249 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8599876-8602121(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18E9.1
Entrez Gene 184646 Entrez gene
SwissProt Q19571 EMBL-EBI
WormBase CE02658 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68807 Hypothetical protein F18E9.1 [Caenorhabditis elegans] ref|NP_509458.1| F18E9.1 [Caenorhabditis elegans] 1.0E-127
blast AAA68807 Hypothetical protein F18E9.1 [Caenorhabditis elegans] ref|NP_509458.1| F18E9.1 [Caenorhabditis elegans] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:182207_AT
tgcatttacattactctcgtctcaacgcacacttcaatatactaatgaggttgcgagcca
ccgacaagctcacacgtttccgcttgcaatgaaaagcgcgacccctgagtcatctcttgc
cattcgcctctctgatgattgtgaaagccagagcaatgaaatcccagttgaacctacaaa
cgattcgggaccaaatgcagacgttggaatcgaggagaatggacatgatcttcttgatgt
gattccagtagaggacaacgagggagaaatcgaagagcatgtagaagatccggtaatcaa
taatagagatattgaagaaccggttcaaaatggcgacgtgcctgtggacaagactgatat
ctcgcatgaaccagcaaatcaagctgtggctgatgcgtctcagggagcatcttccgagag
caaagttactgcgggccaaaaactccagaaggctctccgaagtactattacaatcatgtt
gatccagacgatttcttcaaagagccacaaatgcaagagggtccaagttcatccaagagt
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATTTACATTACTCTCGTCTCAA 239 579 114 Antisense
GTCTCAACGCACACTTCAATATACT 80 471 132 Antisense
TAATGAGGTTGCGAGCCACCGACAA 174 637 156 Antisense
TCACACGTTTCCGCTTGCAATGAAA 113 629 183 Antisense
CCATTCGCCTCTCTGATGATTGTGA 652 269 233 Antisense
GAACCGGTTCAAAATGGCGACGTGC 9 319 430 Antisense
CGACGTGCCTGTGGACAAGACTGAT 577 249 447 Antisense
CAAGCTGTGGCTGATGCGTCTCAGG 464 185 493 Antisense
GTTACTGCGGGCCAAAAACTCCAGA 478 445 538 Antisense
GAAGGCTCTCCGAAGTACTATTACA 547 333 561 Antisense
GAGGGTCCAAGTTCATCCAAGAGTT 39 403 630 Antisense
Sequence Source Affymetrix Proprietary Database