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[182206_s_at]

Description F55A4.8 /REP_DB=WormBase Gene ID /WP=CE19463 /TR=Q94243 /GB=AAD32274.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 65      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 82      6grp_total > 57      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 353.3
(-1.4)
P 		340.3
(-2.1)
P 		322.8
(-3)
P 		438.1
(3)
P 		115
B 348.4
(-2.5)
P 		342.5
(-3)
P 		347.6
(-2.6)
P 		414.5
(3)
P 		72
C 353.4
(-0.9)
P 		311.5
(-2.1)
P 		278.7
(-3)
P 		493.5
(3)
P 		215
avr 351.7
(-1.4) 		331.4
(-2.3) 		316.4
(-3) 		448.7
(3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 424.2
(3)
P 		211.7
(-3)
P 		367.5
(1.4)
P 		369.5
(1.5)
P 		294.7
(-0.7)
P 		365
(1.3)
P 		213
B 331.6
(-0.4)
P 		325.4
(-0.6)
P 		406.9
(1.7)
P 		394
(1.4)
P 		241.7
(-3)
P 		451.2
(3)
P 		210
C 312.7
(-1.6)
P 		308.6
(-1.8)
P 		276.9
(-2.7)
P 		363.8
(-0.2)
P 		265.5
(-3)
P 		474.1
(3)
P 		209
avr 356.2
(0.3) 		281.9
(-2.5) 		350.4
(0.1) 		375.8
(1) 		267.3
(-3) 		430.1
(3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 128.6
(3)
P 		73.9
(-2.1)
P 		84.4
(-1.1)
P 		64.1
(-3)
P 		65
B 111.1
(3)
P 		84.6
(-2.2)
P 		80.6
(-3)
P 		88.3
(-1.5)
P 		31
C 117
(3)
P 		89.6
(-1.9)
P 		97.1
(-0.5)
P 		83.2
(-3)
P 		34
avr 118.9
(3) 		82.7
(-2.4) 		87.4
(-1.7) 		78.5
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 78.2
(-2.1)
P 		75.3
(-3)
P 		80
(-1.5)
P 		93.7
(3)
P 		88.9
(1.4)
P 		88.9
(1.4)
P 		18
B 115.4
(-1.5)
P 		108.3
(-2.1)
P 		98.8
(-2.9)
P 		104.3
(-2.5)
P 		98.2
(-3)
P 		168.2
(3)
P 		70
C 115.9
(0.1)
P 		94.2
(-1.4)
P 		70.5
(-3)
P 		73.2
(-2.8)
P 		85.9
(-2)
P 		158.7
(3)
P 		88
avr 103.2
(-0.8) 		92.6
(-2) 		83.1
(-3) 		90.4
(-2.2) 		91
(-2.1) 		138.6
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182206_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18145
Sequence Type Exemplar sequence
Representative Public ID F55A4.8 NCBI
Target Description F55A4.8 /REP_DB=WormBase Gene ID /WP=CE19463 /TR=Q94243 /GB=AAD32274.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171625(11), NM_171624(11), NM_171626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171625 NCBI Caenorhabditis elegans F55A4.8b (F55A4.8) mRNA, complete cds. 11/11 None
NM_171624 NCBI Caenorhabditis elegans F55A4.8a (F55A4.8) mRNA, complete cds. 11/11 None
NM_171626 NCBI Caenorhabditis elegans F55A4.8c (F55A4.8) mRNA, complete cds. 11/11 None
GENEFINDER00000039519 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1037085:1041821:-1 11/11 None
F55A4.8b ENSEMBL cdna:known chromosome:CEL140:X:1038546:1044378:-1 gene:F55A4.8 11/11 None
F55A4.8c.2 ENSEMBL cdna:known chromosome:CEL140:X:1038559:1040295:-1 gene:F55A4.8 11/11 None
F55A4.8a ENSEMBL cdna:known chromosome:CEL140:X:1038689:1046604:-1 gene:F55A4.8 11/11 None
F55A4.8c.1 ENSEMBL cdna:known chromosome:CEL140:X:1038689:1040520:-1 gene:F55A4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039516 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1038688-1046174(-) 100.0 100.0
Public Domain and Genome References
Ensembl F55A4.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69108 Hypothetical protein F55A4.8b [Caenorhabditis elegans] ref|NP_741717.1| F55A4.8b [Caenorhabditis elegans] 0.0
blast AAD32274 Hypothetical protein F55A4.8a [Caenorhabditis elegans] ref|NP_741716.1| F55A4.8a [Caenorhabditis elegans] 0.0
blast CAE63579 Hypothetical protein CBG08068 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000557 EMBL-EBI Calponin repeat 3.6E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741717.1 12 87-109,124-146,151-173,183-205,212-234,244-266,287-309,324-346,353-375,385-407,427-449,459-481
NP_741716.1 12 227-249,264-286,291-313,323-345,352-374,384-406,427-449,464-486,493-515,525-547,567-589,599-621
NP_741718.1 4 29-48,58-80,100-122,132-154
F55A4.8b 12 87-109,124-146,151-173,183-205,212-234,244-266,287-309,324-346,353-375,385-407,427-449,459-481
F55A4.8c.2 4 29-48,58-80,100-122,132-154
F55A4.8a 12 227-249,264-286,291-313,323-345,352-374,384-406,427-449,464-486,493-515,525-547,567-589,599-621
F55A4.8c.1 4 29-48,58-80,100-122,132-154
GENEFINDER00000039519 12 76-98,113-135,140-162,172-194,201-223,233-255,276-298,313-335,342-364,374-396,417-439,444-463
Sequence
Target Sequence 
>C. ELEGANS:182206_S_AT
ttgcgattacctcaaatctggctcccaattttctctgtggtatcctgtgcaatctctctg
tcatttttggatccaacactctcaaaccacttggaatcgttcaaactaactcctactgaa
attggactcatgttcctactgtgtggtgggttttacacggtaatgtgcccggttttcgga
gcaattatggaccgacttcataatggagagaatttgttacttttcggatcaattgctact
ttattatcaatgtttttcattggcccaacaccattgttgaatggttatgttgagaaagat
ctctgggtaattggtatctccttggcagttcttggtttggctgccagtgcgctttacatt
ccatgcttccagatgtgtttagatgaagtcaaagacaaaggatttgacgacaatttccat
acctatggctgcgtgtctggaatttttcaagctgcgtttggatttggatctttcattggt
cccacatttggtagcgttgtag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCGATTACCTCAAATCTGGCTCC 327 703 1285 Antisense
TCTGTGGTATCCTGTGCAATCTCTC 627 607 1318 Antisense
TTTGGATCCAACACTCTCAAACCAC 85 667 1350 Antisense
GAATCGTTCAAACTAACTCCTACTG 241 327 1378 Antisense
GACTCATGTTCCTACTGTGTGGTGG 649 373 1409 Antisense
AATGTGCCCGGTTTTCGGAGCAATT 408 163 1446 Antisense
AATTGGTATCTCCTTGGCAGTTCTT 512 179 1593 Antisense
GTTCTTGGTTTGGCTGCCAGTGCGC 287 443 1612 Antisense
CATACCTATGGCTGCGTGTCTGGAA 58 213 1702 Antisense
TTGGATCTTTCATTGGTCCCACATT 45 707 1748 Antisense
GGTCCCACATTTGGTAGCGTTGTAG 133 503 1762 Antisense
Sequence Source Affymetrix Proprietary Database