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[182204_at]

Description F53B3.1 /REP_DB=WormBase Gene ID /WP=CE28444 /TR=Q20709 /GB=AAA81404.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 27      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 80      6grp_total > 17      4grp_total > 14      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 259.3
(2)
P 		137.1
(-2.9)
P 		135.7
(-3)
P 		284.8
(3)
P 		149
B 311
(1.1)
P 		159
(-3)
P 		161.1
(-2.9)
P 		379.6
(3)
P 		221
C 283.5
(3)
P 		210.5
(-3)
P 		225.4
(-1.8)
P 		278.5
(2.6)
P 		73
avr 284.6
(1.8) 		168.9
(-3) 		174.1
(-2.8) 		314.3
(3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 322.8
(3)
P 		277.4
(1.6)
P 		217.9
(-0.3)
P 		250.2
(0.7)
P 		134
(-3)
P 		245.8
(0.6)
P 		189
B 363.9
(3)
P 		228.6
(-1.4)
P 		213.6
(-1.9)
P 		178.1
(-3)
P 		178.9
(-3)
P 		202
(-2.2)
P 		186
C 408.8
(3)
P 		236
(-1.6)
P 		282.8
(-0.4)
P 		184.8
(-3)
P 		234.3
(-1.7)
P 		215.3
(-2.2)
P 		224
avr 365.2
(3) 		247.3
(-0.9) 		238.1
(-1.2) 		204.4
(-2.3) 		182.4
(-3) 		221
(-1.7) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 94.4
(3)
P 		29.8
(-3)
P 		35.5
(-2.5)
P 		41.7
(-1.9)
P 		65
B 99.2
(3)
P 		39.3
(-2.8)
P 		37.3
(-3)
P 		80.9
(1.2)
P 		62
C 93.9
(3)
P 		60.5
(-1.3)
P 		78.6
(1)
P 		47
(-3)
P 		47
avr 95.8
(3) 		43.2
(-3) 		50.5
(-2.2) 		56.5
(-1.5) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 59.5
(-1)
P 		98.7
(3)
P 		47.5
(-2.3)
P 		63.4
(-0.6)
P 		40.4
(-3)
P 		59.8
(-1)
P 		58
B 126.6
(3)
P 		76.1
(-0.8)
P 		51.9
(-2.6)
P 		47.2
(-3)
P 		72.7
(-1.1)
P 		75.3
(-0.9)
P 		79
C 151.5
(3)
P 		72
(-1.2)
P 		72
(-1.2)
P 		37.2
(-3)
P 		75.8
(-1)
P 		72.1
(-1.2)
P 		114
avr 112.5
(3) 		82.3
(0.1) 		57.1
(-2.3) 		49.3
(-3) 		63
(-1.7) 		69.1
(-1.1) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182204_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18134
Sequence Type Exemplar sequence
Representative Public ID F53B3.1 NCBI
Target Description F53B3.1 /REP_DB=WormBase Gene ID /WP=CE28444 /TR=Q20709 /GB=AAA81404.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076093(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076093 NCBI Caenorhabditis elegans F53B3.1 (F53B3.1) mRNA, complete cds. 10/11 None
SNAP00000011069 ENSEMBL cdna:SNAP chromosome:CEL140:X:2853935:2857230:-1 10/11 None
GENEFINDER00000011074 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2853935:2857230:-1 10/11 None
F53B3.1 ENSEMBL cdna:known chromosome:CEL140:X:2853688:2857596:-1 gene:F53B3.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2853735-2857230(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53B3.1
Entrez Gene 180575 Entrez gene
SwissProt Q20709 EMBL-EBI
WormBase CE28444 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
16462 pyrophosphatase activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81404 Hypothetical protein F53B3.1 [Caenorhabditis elegans] ref|NP_508494.1| F53B3.1 [Caenorhabditis elegans] 0.0
blast CAE69760 Hypothetical protein CBG16041 [Caenorhabditis briggsae] 0.0
blast CAB04525 Hypothetical protein F58G1.2 [Caenorhabditis elegans] ref|NP_496750.2| F58G1.2 [Caenorhabditis elegans] 1.0E-115
Sequence
Target Sequence 
>C. ELEGANS:182204_AT
tggagcgaactctggtttccgctgttcgttctgtaacatgaagttccttacaccgcgtaa
acttcggaagcacaagaagatgtcccatgtgttcacaaaaacgttccaatgtcatttttg
cgaggagatattcattagtgaagttgcagtgatgacccatgagagaatgcatacgggaat
tataaagtttgaatgcaaagtttgcgactttcgtgcaaaccgatacactgctatggagga
acacaagagagatgagcatggatatgtttgcgcgatttgtcacgaacgtcacgcggaata
ccccgagatgaaacatcacgtgtatgaagagcacggaggctacctggcagcagatgagcc
gacaggtatcactgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGCGAACTCTGGTTTCCGCTGT 629 547 1233 Antisense
TTTCCGCTGTTCGTTCTGTAACATG 639 669 1248 Antisense
TAACATGAAGTTCCTTACACCGCGT 538 639 1266 Antisense
ACACCGCGTAAACTTCGGAAGCACA 486 87 1282 Antisense
GAAGATGTCCCATGTGTTCACAAAA 304 339 1308 Antisense
GTGAAGTTGCAGTGATGACCCATGA 233 481 1370 Antisense
GCGACTTTCGTGCAAACCGATACAC 473 287 1436 Antisense
AACCGATACACTGCTATGGAGGAAC 619 143 1450 Antisense
TTGCGCGATTTGTCACGAACGTCAC 403 701 1500 Antisense
CGTCACGCGGAATACCCCGAGATGA 257 243 1519 Antisense
AGATGAGCCGACAGGTATCACTGAA 157 67 1584 Antisense
Sequence Source Affymetrix Proprietary Database