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[182203_at]

Description K03E6.4 /REP_DB=WormBase Gene ID /WP=CE07330 /TR=Q21191 /GB=AAC69043.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 48
(-0.1)
A 		50.2
(0.1)
A 		14.7
(-3)
A 		83.8
(3)
A 		69
B 19.2
(-2.1)
A 		6.3
(-3)
A 		68.1
(1.4)
A 		90.3
(3)
A 		84
C 16.6
(-1.8)
A 		8.4
(-3)
A 		18.2
(-1.6)
A 		50
(3)
A 		42
avr 27.9
(-2.3) 		21.6
(-3) 		33.7
(-1.6) 		74.7
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 104.9
(3)
A 		13.3
(-3)
A 		51
(-0.5)
A 		59.1
(0)
A 		75.9
(1.1)
A 		76.6
(1.1)
A 		92
B 67.2
(3)
A 		60.4
(2.2)
A 		15.7
(-3)
A 		26.3
(-1.8)
A 		31.5
(-1.2)
A 		50.9
(1.1)
A 		52
C 58.1
(1)
A 		41.3
(-0.4)
A 		8
(-3)
A 		83.7
(3)
A 		35.2
(-0.8)
A 		11.9
(-2.7)
A 		76
avr 76.7
(3) 		38.3
(-1.4) 		24.9
(-3) 		56.4
(0.6) 		47.5
(-0.4) 		46.5
(-0.5) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 17.5
(3)
A 		10.9
(0.1)
A 		3.8
(-3)
A 		12.3
(0.7)
A 		14
B 6.1
(-1.5)
A 		1.6
(-3)
A 		15.8
(1.8)
A 		19.2
(3)
A 		18
C 5.5
(0.1)
A 		2.4
(-3)
A 		6.3
(0.9)
A 		8.4
(3)
A 		6
avr 9.7
(0.4) 		5
(-3) 		8.6
(-0.4) 		13.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 19.3
(1.8)
A 		4.7
(-3)
A 		11.1
(-0.9)
A 		15
(0.4)
A 		22.9
(3)
A 		18.6
(1.6)
A 		18
B 23.4
(3)
A 		20.1
(2)
A 		3.8
(-3)
A 		7
(-2)
A 		12.8
(-0.2)
A 		19
(1.7)
A 		20
C 21.5
(3)
A 		12.6
(0.3)
A 		2
(-3)
A 		16.8
(1.6)
A 		11.4
(-0.1)
A 		4
(-2.4)
A 		20
avr 21.4
(3) 		12.5
(-0.4) 		5.6
(-3) 		12.9
(-0.2) 		15.7
(0.8) 		13.9
(0.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182203_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18131
Sequence Type Exemplar sequence
Representative Public ID K03E6.4 NCBI
Target Description K03E6.4 /REP_DB=WormBase Gene ID /WP=CE07330 /TR=Q21191 /GB=AAC69043.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075802 NCBI Caenorhabditis elegans K03E6.4 (K03E6.4) mRNA, complete cds. 11/11 None
SNAP00000010590 ENSEMBL cdna:SNAP chromosome:CEL140:X:1066786:1069030:-1 9/11 None
GENEFINDER00000010595 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1066786:1069030:-1 11/11 None
K03E6.4 ENSEMBL cdna:known chromosome:CEL140:X:1066786:1069030:-1 gene:K03E6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1066785-1069030(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03E6.4
Entrez Gene 186954 Entrez gene
SwissProt Q21191 EMBL-EBI
WormBase CE07330 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69043 Hypothetical protein K03E6.4 [Caenorhabditis elegans] ref|NP_508203.1| K03E6.4 [Caenorhabditis elegans] 1.0E-131
blast AAC69043 Hypothetical protein K03E6.4 [Caenorhabditis elegans] ref|NP_508203.1| K03E6.4 [Caenorhabditis elegans] 1.0E-127
blast CAE65900 Hypothetical protein CBG11067 [Caenorhabditis briggsae] 1.0E-100
blast AAC69043 Hypothetical protein K03E6.4 [Caenorhabditis elegans] ref|NP_508203.1| K03E6.4 [Caenorhabditis elegans] 1.0E-100
blast CAE65900 Hypothetical protein CBG11067 [Caenorhabditis briggsae] 9.0E-97
blast CAE65900 Hypothetical protein CBG11067 [Caenorhabditis briggsae] 7.0E-81
blast NP_001019544 B9 protein-like [Danio rerio] gb|AAH95392.1| B9 protein-like [Danio rerio] 1.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR010796 EMBL-EBI B9 3.1E-62
Pfam IPR010796 EMBL-EBI B9 1.8E-54
Sequence
Target Sequence 
>C. ELEGANS:182203_AT
agagacagtttcactatcctcgttctcatttcgaggcgctgataatcagattttcatcga
tttgcccttcgagtgtggtttgaaaggaagcagcccttttatgtggcctcgtcttgtact
caactgtttttctaaagaccattctggtaaagattgtgtgactggctatggtatgcttcc
gattccaacagagcctggaaaacacgtttgccgagtacactgtttcctgccagaaccttc
ttcgacagttcagcaattgattgcaaagttgagacgagtgaatgcagagtttgtggatcc
aatgttaccggcgaatgcagatggaagatatgcctgccgaacatcaacaaaaggctacgt
tgatctggaaatcaatgtcagcatcaaatgctccgacacggcatataaattcacttccac
aagcacggaaatcaagagcagtaatagtcatgccaccaacaatgtctccacaacaatagc
ggatttggctggaatcgaggcggttggcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGACAGTTTCACTATCCTCGTTC 218 67 141 Antisense
GATTTGCCCTTCGAGTGTGGTTTGA 538 427 199 Antisense
GAAGCAGCCCTTTTATGTGGCCTCG 67 341 227 Antisense
CCTCGTCTTGTACTCAACTGTTTTT 367 267 247 Antisense
GTGACTGGCTATGGTATGCTTCCGA 348 483 298 Antisense
ATGCTTCCGATTCCAACAGAGCCTG 334 43 313 Antisense
CTGCCAGAACCTTCTTCGACAGTTC 588 235 367 Antisense
GGATCCAATGTTACCGGCGAATGCA 29 513 435 Antisense
GAAGATATGCCTGCCGAACATCAAC 628 337 464 Antisense
ATAGTCATGCCACCAACAATGTCTC 190 23 584 Antisense
GGCTGGAATCGAGGCGGTTGGCAAC 53 541 627 Antisense
Sequence Source Affymetrix Proprietary Database