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[182200_at]

Description C05C12.5 /REP_DB=WormBase Gene ID /WP=CE02968 /TR=Q17648 /GB=CAA92722.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 11.5
(-1)
A 		10.2
(-1.7)
A 		7.7
(-3)
A 		19.1
(3)
A 		11
B 10.1
(-2.6)
A 		8.8
(-3)
A 		26.2
(3)
A 		11
(-2.2)
A 		17
C 11.3
(-2.6)
A 		51.7
(3)
A 		8.6
(-3)
A 		10.3
(-2.8)
A 		43
avr 11
(-3) 		23.6
(3) 		14.2
(-1.5) 		13.5
(-1.8) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 11.4
(-3)
A 		21.9
(-2.8)
A 		12.4
(-3)
A 		58
(-2.2)
A 		250
(0.9)
P 		374.9
(3)
P 		364
B 11.7
(-3)
A 		41
(-2.3)
A 		9.8
(-3)
A 		13.7
(-2.9)
A 		263.6
(3)
P 		243.3
(2.5)
P 		254
C 12.7
(-3)
A 		91.3
(-1.3)
A 		15.5
(-2.9)
A 		39.6
(-2.4)
A 		221.9
(1.6)
P 		282.9
(3)
P 		270
avr 11.9
(-3) 		51.4
(-2.2) 		12.6
(-3) 		37.1
(-2.5) 		245.2
(1.9) 		300.4
(3) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.2
(3)
A 		2.2
(-2.5)
A 		2
(-3)
A 		2.8
(-0.8)
A 		2
B 3.2
(-1.5)
A 		2.2
(-3)
A 		6.1
(3)
A 		2.3
(-2.8)
A 		4
C 3.7
(-2.1)
A 		14.9
(3)
A 		3
(-2.4)
A 		1.7
(-3)
A 		13
avr 3.7
(-1) 		6.4
(3) 		3.7
(-1) 		2.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 2.1
(-3)
A 		7.8
(-2.6)
A 		2.7
(-3)
A 		14.7
(-2.2)
A 		75.5
(1.9)
P 		91.3
(3)
P 		89
B 4.1
(-2.9)
A 		13.6
(-2.4)
A 		2.4
(-3)
A 		3.6
(-2.9)
A 		107.1
(3)
P 		90.7
(2.1)
P 		105
C 4.7
(-2.9)
A 		27.9
(-1.4)
A 		3.9
(-3)
A 		8
(-2.7)
A 		71.8
(1.5)
P 		94.7
(3)
P 		91
avr 3.6
(-3) 		16.4
(-2.1) 		3
(-3) 		8.8
(-2.6) 		84.8
(2.5) 		92.2
(3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182200_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10337
Sequence Type Exemplar sequence
Representative Public ID C05C12.5 NCBI
Target Description C05C12.5 /REP_DB=WormBase Gene ID /WP=CE02968 /TR=Q17648 /GB=CAA92722.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069712(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069712 NCBI Caenorhabditis elegans C05C12.5 (C05C12.5) mRNA, complete cds. 11/11 None
SNAP00000019479 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11260429:11261088:-1 11/11 None
GENEFINDER00000019480 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11260429:11261088:-1 11/11 None
C05C12.5 ENSEMBL cdna:known chromosome:CEL140:IV:11260429:11261122:-1 gene:C05C12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11260434-11261094(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05C12.5
Entrez Gene 178033 Entrez gene
SwissProt Q17648 EMBL-EBI
WormBase CE02968 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92722 Hypothetical protein C05C12.5 [Caenorhabditis elegans] ref|NP_502113.1| C05C12.5 [Caenorhabditis elegans] 8.0E-54
Sequence
Target Sequence 
>C. ELEGANS:182200_AT
ttggcgccacagatgcattcaatgcaattgttcaaaaagtcgacgaaacacttattcaag
cagaatcccatcttcgtaatcttcatgaagatacagtgggagcaaagccgtctgatagtt
tgccggaccgcactatcgttccgtccccatcttctcaatcggaacgttcatgctccccgg
agcctcgtattgttgctcctcaattgtctgcatactctggatcatccgctgcgtcttctt
cttccgtgaatcatattgatgtgaagagcaagtcgtatttggcattggataagaagaaag
cactgatcatgacttcgctcaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCGCCACAGATGCATTCAATGC 327 707 26 Antisense
AGAATCCCATCTTCGTAATCTTCAT 502 75 87 Antisense
GTGGGAGCAAAGCCGTCTGATAGTT 386 487 121 Antisense
GATAGTTTGCCGGACCGCACTATCG 76 425 139 Antisense
TCCCCATCTTCTCAATCGGAACGTT 249 597 169 Antisense
TCTCAATCGGAACGTTCATGCTCCC 318 613 178 Antisense
CCGGAGCCTCGTATTGTTGCTCCTC 233 263 202 Antisense
GTTGCTCCTCAATTGTCTGCATACT 66 441 217 Antisense
TCTGCATACTCTGGATCATCCGCTG 486 609 232 Antisense
GAGCAAGTCGTATTTGGCATTGGAT 327 391 291 Antisense
GCACTGATCATGACTTCGCTCAAGT 259 315 325 Antisense
Sequence Source Affymetrix Proprietary Database