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[182199_at]

Description ZK1053.6 /REP_DB=WormBase Gene ID /WP=CE15525 /TR=O02340 /GB=CAB04979.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 62      4grp_high_8_8 > 29      6grp_total > 0      4grp_total > 34      6grp_total_sub > Hat      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 47.6
(-3)
P 		51.3
(-2.4)
P 		66.4
(0.2)
P 		83.2
(3)
P 		36
B 30.6
(-3)
M 		58.5
(3)
P 		36.7
(-1.7)
A 		41
(-0.8)
P 		28
C 50.5
(1.4)
P 		57.7
(3)
P 		31.3
(-3)
P 		38.5
(-1.4)
P 		26
avr 42.9
(-3) 		55.8
(3) 		44.8
(-2.1) 		54.2
(2.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 4
(-3)
A 		26.8
(0.8)
P 		23.5
(0.3)
A 		19.1
(-0.5)
A 		29.8
(1.3)
A 		39.7
(3)
M 		36
B 41.9
(0.3)
P 		42.2
(0.4)
P 		50.4
(3)
P 		48.4
(2.4)
P 		39
(-0.6)
M 		31.5
(-3)
P 		19
C 30.7
(-1.5)
A 		53.4
(3)
P 		38.2
(-0)
A 		23.1
(-3)
A 		43.7
(1.1)
P 		52.8
(2.9)
P 		30
avr 25.5
(-3) 		40.8
(2.8) 		37.4
(1.5) 		30.2
(-1.2) 		37.5
(1.6) 		41.3
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 17.3
(2.9)
P 		11.1
(-3)
P 		17.4
(3)
P 		12.2
(-2)
P 		6
B 9.8
(-1.7)
M 		14.5
(3)
P 		8.5
(-3)
A 		8.7
(-2.8)
P 		6
C 16.7
(3)
P 		16.6
(2.9)
P 		10.9
(-0.4)
P 		6.5
(-3)
P 		10
avr 14.6
(3) 		14.1
(2.5) 		12.3
(0.5) 		9.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.7
(-3)
A 		9.5
(2.9)
P 		5.1
(-0.1)
A 		4.9
(-0.2)
A 		9
(2.5)
A 		9.7
(3)
M 		9
B 14.6
(1.2)
P 		14
(0.4)
P 		12.2
(-2.3)
P 		12.8
(-1.4)
P 		15.8
(3)
M 		11.7
(-3)
P 		4
C 11.4
(0.1)
A 		16.3
(2.4)
P 		9.7
(-0.7)
A 		4.7
(-3)
A 		14.2
(1.4)
P 		17.7
(3)
P 		13
avr 8.9
(-1.6) 		13.3
(3) 		9
(-1.4) 		7.5
(-3) 		13
(2.7) 		13
(2.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182199_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1482
Sequence Type Exemplar sequence
Representative Public ID ZK1053.6 NCBI
Target Description ZK1053.6 /REP_DB=WormBase Gene ID /WP=CE15525 /TR=O02340 /GB=CAB04979.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060921(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060921 NCBI Caenorhabditis elegans ZK1053.6 (ZK1053.6) mRNA, complete cds. 11/11 None
SNAP00000040800 ENSEMBL cdna:SNAP chromosome:CEL140:I:13246659:13248845:1 11/11 None
ZK1053.6 ENSEMBL cdna:known chromosome:CEL140:I:13245173:13248845:1 gene:ZK1053.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040809 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13245103-13248776(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1053.6
Entrez Gene 191510 Entrez gene
SwissProt O02340 EMBL-EBI
WormBase CE15525 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8324 cation transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04979 Hypothetical protein ZK1053.6 [Caenorhabditis elegans] ref|NP_493322.1| ZK1053.6 [Caenorhabditis elegans] 0.0
blast CAE72997 Hypothetical protein CBG20346 [Caenorhabditis briggsae] 1.0E-173
blast CAE72997 Hypothetical protein CBG20346 [Caenorhabditis briggsae] 1.0E-167
blast CAE58546 Hypothetical protein CBG01705 [Caenorhabditis briggsae] 3.0E-38
blast CAE58546 Hypothetical protein CBG01705 [Caenorhabditis briggsae] 9.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR006667 EMBL-EBI MgtE integral membrane region 1.3E-6
Pfam IPR006667 EMBL-EBI MgtE integral membrane region 4.2E-49
Pfam IPR006667 EMBL-EBI MgtE integral membrane region 1.3E-6
Pfam IPR006667 EMBL-EBI MgtE integral membrane region 4.2E-49
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.9E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493322.1 10 35-57,151-170,233-255,292-314,323-345,355-377,390-407,475-497,509-531,546-568
ZK1053.6 10 35-57,151-170,233-255,292-314,323-345,355-377,390-407,475-497,509-531,546-568
SNAP00000040800 9 72-94,159-181,218-240,249-271,281-303,316-333,401-423,435-457,472-494
Sequence
Target Sequence 
>C. ELEGANS:182199_AT
atgctctgcgcattgccaagcaacagtgcttcactctggcgtttgcagcgatggtcagct
gtggtgcgggtctacttcaaagtaaaggtgcgatgacctacccaaactacccagcatatc
aaacactcatctctggactcgctggaaatcgaggagccgtccttgcatcaaggatatcat
cacatctagaagtacacaagacatcagacctgggatggaggcaacgtgcatcgccaatta
gttactacagatctgcgagctcagagtctagaactgcgaggcttctgttgttcacggcgt
taccgtttcaaatgttctttgtcgggctctcgactgcaatgtcatttgtgattgatgagc
cggtggagacggatttccggtttttcattgcatatgcactagtagttttgattcaacaat
ccacaattctctacctggcccagctgatagtcttcgccttctggtcattcggtattgatc
cggacaatcatgcaattccacttctgacctctgctgcagacgtctgcggatgcggattac
tgtacctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCTGCGCATTGCCAAGCAACA 299 43 1154 Antisense
AAGCAACAGTGCTTCACTCTGGCGT 374 151 1171 Antisense
CTGTGGTGCGGGTCTACTTCAAAGT 482 237 1212 Antisense
TATCAAACACTCATCTCTGGACTCG 241 661 1270 Antisense
GAAATCGAGGAGCCGTCCTTGCATC 262 363 1298 Antisense
GAACTGCGAGGCTTCTGTTGTTCAC 474 349 1424 Antisense
GATTTCCGGTTTTTCATTGCATATG 450 427 1525 Antisense
CCAGCTGATAGTCTTCGCCTTCTGG 143 273 1593 Antisense
AATCATGCAATTCCACTTCTGACCT 139 171 1639 Antisense
TTCTGACCTCTGCTGCAGACGTCTG 702 689 1655 Antisense
TGCGGATGCGGATTACTGTACCTCT 328 581 1678 Antisense
Sequence Source Affymetrix Proprietary Database