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[182198_at]

Description T16H5.1 /REP_DB=WormBase Gene ID /WP=CE18260 /TR=O61715 /GB=AAC16426.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 37      6grp_cgc > 31      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 68.1
(3)
A 		53.8
(1.5)
A 		10.1
(-3)
A 		32.3
(-0.7)
A 		58
B 61.8
(3)
A 		40.4
(0.8)
A 		2.5
(-3)
A 		15.8
(-1.7)
A 		59
C 68.3
(3)
A 		31.5
(-2.9)
A 		31
(-3)
A 		42
(-1.2)
A 		37
avr 66.1
(3) 		41.9
(0.2) 		14.5
(-3) 		30
(-1.2) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 76.6
(3)
A 		58.6
(1.2)
A 		32
(-1.4)
A 		16.2
(-3)
A 		29.9
(-1.6)
A 		17.3
(-2.9)
A 		60
B 71.6
(3)
P 		53.6
(1.3)
A 		60.3
(1.9)
A 		38.3
(-0.1)
A 		30.3
(-0.8)
A 		7.2
(-3)
A 		64
C 45.4
(0.7)
A 		66.8
(3)
A 		13.4
(-2.8)
A 		43.3
(0.4)
A 		11.8
(-3)
A 		20.9
(-2)
A 		55
avr 64.5
(3) 		59.7
(2.4) 		35.2
(-0.6) 		32.6
(-0.9) 		24
(-1.9) 		15.1
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 24.8
(3)
A 		11.7
(-0.5)
A 		2.6
(-3)
A 		4.7
(-2.4)
A 		22
B 19.7
(3)
A 		10
(-0)
A 		0.6
(-3)
A 		3.4
(-2.1)
A 		19
C 22.6
(3)
A 		9
(-2.3)
A 		10.8
(-1.6)
A 		7.1
(-3)
A 		16
avr 22.4
(3) 		10.2
(-1.1) 		4.7
(-3) 		5.1
(-2.9) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 14.1
(0.6)
A 		20.8
(3)
A 		7
(-2)
A 		4.1
(-3)
A 		9
(-1.2)
A 		4.2
(-3)
A 		17
B 24.9
(3)
P 		17.8
(1.1)
A 		14.7
(0.2)
A 		10.1
(-1)
A 		12.3
(-0.4)
A 		2.7
(-3)
A 		22
C 16.8
(1.7)
A 		20.4
(3)
A 		3.4
(-3)
A 		8.7
(-1.1)
A 		3.8
(-2.9)
A 		7
(-1.7)
A 		17
avr 18.6
(2.6) 		19.7
(3) 		8.4
(-1.5) 		7.6
(-1.8) 		8.4
(-1.5) 		4.6
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182198_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.234
Sequence Type Exemplar sequence
Representative Public ID T16H5.1 NCBI
Target Description T16H5.1 /REP_DB=WormBase Gene ID /WP=CE18260 /TR=O61715 /GB=AAC16426.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058582(11), NM_182064(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058582 NCBI Caenorhabditis elegans INneXin family member (inx-19) (inx-19) mRNA, complete cds. 11/11 A 
NM_182064 NCBI Caenorhabditis elegans INneXin family member (inx-19) (inx-19) mRNA, complete cds. 11/11 A 
SNAP00000044264 ENSEMBL cdna:SNAP chromosome:CEL140:I:2451975:2456445:-1 11/11 None
GENEFINDER00000044265 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2451975:2456464:-1 11/11 None
T16H5.1a ENSEMBL cdna:known chromosome:CEL140:I:2451909:2463462:-1 gene:T16H5.1 11/11 A 
T16H5.1b ENSEMBL cdna:known chromosome:CEL140:I:2451975:2464638:-1 gene:T16H5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2452918-2456445(-) 100.0 100.0
Public Domain and Genome References
Ensembl T16H5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM45360 Innexin protein 19, isoform a [Caenorhabditis elegans] ref|NP_490983.2| INneXin family member (inx-19) [Caenorhabditis elegans] 0.0
blast AAO21399 Innexin protein 19, isoform b [Caenorhabditis elegans] ref|NP_871864.1| INneXin family member (inx-19) [Caenorhabditis elegans] 0.0
blast T33045 hypothetical protein T16H5.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490983.2 1 302-324
NP_871864.1 1 286-308
T16H5.1a 1 302-324
T16H5.1b 1 286-308
SNAP00000044264 1 286-308
GENEFINDER00000044265 1 293-315
Sequence
Target Sequence 
>C. ELEGANS:182198_AT
gaattcgagcccgtggatggattgctcgaatcaaattttcaagatttctttccggacagt
gtttatcgattttacatagtttcacgaaattactgtactcgatgaatgtggtggcacaat
ttttgatactcaatgcgtgcctcaaaagtagcgatttcttgtttttcggatttcaggtgc
tcaacgatatctgggcgggccgcccgtggacagaaaccggtcattttccacgtgtaacgc
tttgcgatttcgaagttcgatatctggcgaatcttaatcgatatacagttcaatgtgctc
tgctaatcaatataatcaatgaaaaagtgttcgcgttcctctggtgctggtacatgatcc
tggcgataatcaccacttgctcgtttatttattggattgctaactcgtttatccattcgg
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCGAGCCCGTGGATGGATTGC 621 323 539 Antisense
TCAAGATTTCTTTCCGGACAGTGTT 521 629 577 Antisense
GATACTCAATGCGTGCCTCAAAAGT 644 423 663 Antisense
AGGTGCTCAACGATATCTGGGCGGG 345 57 713 Antisense
GACAGAAACCGGTCATTTTCCACGT 176 367 747 Antisense
TTTCCACGTGTAACGCTTTGCGATT 475 669 763 Antisense
TGAAAAAGTGTTCGCGTTCCTCTGG 392 571 858 Antisense
TGGTGCTGGTACATGATCCTGGCGA 141 553 880 Antisense
GATCCTGGCGATAATCACCACTTGC 96 417 894 Antisense
ATCACCACTTGCTCGTTTATTTATT 273 27 907 Antisense
TGCTAACTCGTTTATCCATTCGGAA 290 575 936 Antisense
Sequence Source Affymetrix Proprietary Database