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[182197_at]

Description K09C4.7 /REP_DB=WormBase Gene ID /WP=CE04735 /TR=Q21378 /GB=AAA83620.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 28      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.8
(-2.9)
A 		11.4
(3)
A 		1.6
(-3)
A 		4.4
(-1.3)
A 		10
B 6.8
(3)
A 		2.9
(-1.3)
A 		1.8
(-2.6)
A 		1.4
(-3)
A 		5
C 4
(-1.4)
A 		1.9
(-2.8)
A 		1.5
(-3)
A 		11.1
(3)
A 		10
avr 4.2
(0.9) 		5.4
(2.7) 		1.6
(-3) 		5.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 6.2
(3)
A 		2.3
(-2.1)
A 		1.6
(-3)
A 		2.2
(-2.2)
A 		3
(-1.2)
A 		4
(0.1)
A 		5
B 2.9
(3)
A 		1.6
(-3)
A 		1.9
(-1.6)
A 		1.6
(-3)
A 		2.5
(1.2)
A 		1.8
(-2.1)
A 		1
C 2.9
(-1.5)
A 		6.9
(3)
A 		1.7
(-2.9)
A 		2
(-2.5)
A 		1.6
(-3)
A 		2.4
(-2.1)
A 		5
avr 4
(3) 		3.6
(2) 		1.7
(-3) 		1.9
(-2.5) 		2.4
(-1.2) 		2.7
(-0.4) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.7
(-2.1)
A 		2.5
(3)
A 		0.4
(-3)
A 		0.6
(-2.4)
A 		2
B 2.2
(3)
A 		0.7
(-1.7)
A 		0.4
(-2.7)
A 		0.3
(-3)
A 		2
C 1.3
(0.4)
A 		0.6
(-2.6)
A 		0.5
(-3)
A 		1.9
(3)
A 		1
avr 1.4
(3) 		1.3
(2.4) 		0.4
(-3) 		0.9
(0) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.1
(3)
A 		0.8
(0.4)
A 		0.4
(-3)
A 		0.6
(-1.3)
A 		0.9
(1.3)
A 		1
(2.1)
A 		1
B 1
(3)
A 		0.5
(-2)
A 		0.5
(-2)
A 		0.4
(-3)
A 		1
(3)
A 		0.7
(-0)
A 		1
C 1.1
(-0.5)
A 		2.1
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		0.8
(-1.6)
A 		2
avr 1.1
(3) 		1.1
(3) 		0.4
(-3) 		0.5
(-2.1) 		0.8
(0.4) 		0.8
(0.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182197_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18103
Sequence Type Exemplar sequence
Representative Public ID K09C4.7 NCBI
Target Description K09C4.7 /REP_DB=WormBase Gene ID /WP=CE04735 /TR=Q21378 /GB=AAA83620.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076161 NCBI Caenorhabditis elegans K09C4.7 (K09C4.7) mRNA, complete cds. 11/11 None
GENEFINDER00000004471 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3271947:3275602:1 9/11 None
K09C4.7 ENSEMBL cdna:known chromosome:CEL140:X:3272719:3273144:1 gene:K09C4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3272719-3273145(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09C4.7
Entrez Gene 187197 Entrez gene
SwissProt Q21378 EMBL-EBI
WormBase CE04735 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83621 Hypothetical protein K09C4.6 [Caenorhabditis elegans] ref|NP_508563.1| K09C4.6 [Caenorhabditis elegans] 1.0E-113
blast AAA83620 Hypothetical protein K09C4.7 [Caenorhabditis elegans] ref|NP_508562.1| K09C4.7 [Caenorhabditis elegans] 4.0E-63
blast AAA83620 Hypothetical protein K09C4.7 [Caenorhabditis elegans] ref|NP_508562.1| K09C4.7 [Caenorhabditis elegans] 3.0E-26
Sequence
Target Sequence 
>C. ELEGANS:182197_AT
gaagatatcacttttccttgtctagaaactttcaaattgtttccatcaactttgtacaat
atttggaaccaaaacaccttcataaaaactggagaatgccaaaatcgaggcaaatatgaa
tcaccagacagccgattgtcaaactatttggaatcggtggaaaatcatagcaccgttcat
tggggcgatgaaaaatgctcatggcagttaccctggcacagaagtcgatattccaaggac
ctattgaaccgcctcccttatcaaagtgagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATATCACTTTTCCTTGTCTAG 525 337 25 Antisense
TATTTGGAACCAAAACACCTTCATA 200 655 84 Antisense
ATCGAGGCAAATATGAATCACCAGA 490 33 128 Antisense
GAATCACCAGACAGCCGATTGTCAA 329 327 142 Antisense
ACAGCCGATTGTCAAACTATTTGGA 191 103 152 Antisense
TCATAGCACCGTTCATTGGGGCGAT 232 619 189 Antisense
AATGCTCATGGCAGTTACCCTGGCA 314 165 218 Antisense
GCAGTTACCCTGGCACAGAAGTCGA 255 313 228 Antisense
GGCACAGAAGTCGATATTCCAAGGA 337 535 239 Antisense
TTCCAAGGACCTATTGAACCGCCTC 573 581 255 Antisense
AACCGCCTCCCTTATCAAAGTGAGT 61 145 271 Antisense
Sequence Source Affymetrix Proprietary Database